other:uvcdat:cdat_conda:cdat_8_0_py2
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other:uvcdat:cdat_conda:cdat_8_0_py2 [2021/02/26 18:31] jypeter Improved... |
other:uvcdat:cdat_conda:cdat_8_0_py2 [2021/02/26 21:11] jypeter [Installing Miniconda3] Many updates |
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| * e.g. WSL, assuming that there is a ''C:\Scratch\<your_login>'' directory:\\ ''cd /mnt/c/Scratch/<your_login>'' | * e.g. WSL, assuming that there is a ''C:\Scratch\<your_login>'' directory:\\ ''cd /mnt/c/Scratch/<your_login>'' | ||
| * Use ''wget'' to download the installer:\\ ''wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'' (90 Mb, 26 Feb 2021) | * Use ''wget'' to download the installer:\\ ''wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'' (90 Mb, 26 Feb 2021) | ||
| + | |||
| * Execute the installer | * Execute the installer | ||
| * ''bash Miniconda3-latest-Linux-x86_64.sh'' | * ''bash Miniconda3-latest-Linux-x86_64.sh'' | ||
| * Accept the license | * Accept the license | ||
| + | * Note: at the end of the installation (next step), **answer //no// to the following question**, so that the installer does not change your existing shell initialization files!\\ ''Do you wish the installer to initialize Miniconda3 by running conda init? [yes|no]'' => **NO** | ||
| * Specify an explicit installation path **outside of your //home// directory**, with enough disk space (more than 3 Gb if you are going to install CDAT and some extra packages), preferably on a disk that is not backed up: | * Specify an explicit installation path **outside of your //home// directory**, with enough disk space (more than 3 Gb if you are going to install CDAT and some extra packages), preferably on a disk that is not backed up: | ||
| * Installations by //JYP//: | * Installations by //JYP//: | ||
| * Linux at LSCE: ''/home/share/unix_files/cdat/miniconda3'', or another subdirectory of ''/home/share/unix_files/cdat/'' | * Linux at LSCE: ''/home/share/unix_files/cdat/miniconda3'', or another subdirectory of ''/home/share/unix_files/cdat/'' | ||
| - | * Linux on ciclad: ''/data/jypmce/cdat/miniconda3'', or another subdirectory of ''/data/jypmce/cdat/'' | + | * Linux on ciclad: ''/data/jypmce/cdat/miniconda3'', or another sub-directory of ''/data/jypmce/cdat/'' |
| - | * WSL: installing to a directory that is not in ''/home/'' <wrap hi>does not work</wrap> (e.g. ''/mnt/h/CDAT/miniconda3'',assuming there is a ''H:\CDAT\'' directory, does not work)\\ Need to accept the installation in the default location: ''/home/jypeter/miniconda3'' | + | * WSL: installing to a directory that is not in ''/home/'' <wrap hi>does not work</wrap> (e.g. ''/mnt/h/CDAT/miniconda3'',assuming there is a ''H:\CDAT\'' directory, does not work)\\ You need to accept the installation in the default location: ''/home/<your_login>/miniconda3'' |
| - | * Resulting ''miniconda3'' directory size is 302M\\ <code> >du -sh miniconda3 | + | * The resulting ''miniconda3'' directory size is 342M\\ <code> > du -sh miniconda3 |
| - | 302M miniconda3 | + | 342M miniconda3 |
| - | >cd miniconda3 | + | |
| - | /home/share/unix_files/cdat/miniconda3 | + | > cd miniconda3 |
| - | >du -sh * | + | |
| - | 6.3M bin | + | > du -sh * |
| - | 2.0M compiler_compat | + | 20M bin |
| - | 524K conda-meta | + | 0 compiler_compat |
| - | 4.0K envs | + | 4.0K condabin |
| - | 28K etc | + | 684K conda-meta |
| - | 5.2M include | + | 0 envs |
| - | 146M lib | + | 16K etc |
| - | 8.0K LICENSE.txt | + | 5.5M include |
| - | 142M pkgs | + | 4.0K info |
| - | 928K share | + | 198M lib |
| - | 92K ssl | + | 12K LICENSE.txt |
| - | 12K x86_64-conda_cos6-linux-gnu</code> | + | 114M pkgs |
| - | * Accept the automatic update of the //PATH// variable in ''.bashrc'' (note: the installer automatically creates a backup of ''.bashrc''). This will some extra lines at the end of ''.bashrc'' used by the //old-style conda initialization// (we will later switch to the //new-style//). The added lines should look like: | + | 604K share |
| - | * ''# added by Miniconda3 installer''\\ ''export PATH="/home/share/unix_files/cdat/miniconda3/bin:$PATH"'' | + | 4.0K shell |
| - | * ''# added by Miniconda4.xxx installer''\\ ''[some really fancy bash shell commands]'' | + | 0 ssl |
| - | * Remove the installer: ''rm Miniconda3-latest-Linux-x86_64.sh'' | + | 0 x86_64-conda_cos6-linux-gnu</code> |
| - | * Open a new terminal (if you use bash) or open a new terminal and type ''bash'' | + | |
| - | * check if the python from the conda distribution has been correctly installed\\ <code> > bash | + | * Initialize the newly installed conda environment: |
| + | * bash shell: ''source <installation_path>/miniconda3/etc/profile.d/conda.sh'' | ||
| + | * tcsh shell: ''source <installation_path>/miniconda3/etc/profile.d/conda.csh'' | ||
| + | |||
| + | * Check if you can use the ''conda'' command, and use it to initialize the //base// environment | ||
| + | * <code>$ which conda | ||
| + | <installation_path>/miniconda3/condabin/conda | ||
| $ which python | $ which python | ||
| - | /home/share/unix_files/cdat/miniconda3/bin/python | + | /usr/bin/python |
| - | $ which conda | + | $ conda activate |
| - | /home/share/unix_files/cdat/miniconda3/bin/conda</code> | + | (base) $ which python |
| - | * Update and clean the new installation\\ <code>$ conda update --all | + | <installation_path>/miniconda3/bin/python</code> |
| - | $ du -sh /home/share/unix_files/cdat/miniconda3 | + | * Update the new installation |
| - | 515M /home/share/unix_files/cdat/miniconda3 | + | * <code>$ conda update --all |
| - | $ conda clean --all | + | |
| - | $ du -sh /home/share/unix_files/cdat/miniconda3 | + | |
| - | 270M /home/share/unix_files/cdat/miniconda3 | + | |
| - | $ conda list | + | |
| - | # packages in environment at /home/share/unix_files/cdat/miniconda3: | + | |
| - | # | + | |
| - | # Name Version Build Channel | + | |
| - | [...] | + | |
| - | python 3.7.1 h0371630_3 | + | |
| - | readline 7.0 h7b6447c_5 | + | |
| - | requests 2.20.0 py37_0 | + | |
| [...]</code> | [...]</code> | ||
| + | * During the update, the ''miniconda3'' directory size goes from 432 Mb to 581 Mb. This directory will keep on growing, which is the reason why you should put it on a (preferably non backed up) disk where you have //enough// space | ||
| + | * Remove the installer: ''rm Miniconda3-latest-Linux-x86_64.sh'' | ||
| ==== Post-Miniconda3 installation ==== | ==== Post-Miniconda3 installation ==== | ||
other/uvcdat/cdat_conda/cdat_8_0_py2.txt · Last modified: 2021/02/27 13:55 by jypeter
