other:uvcdat:cdat_conda:index
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other:uvcdat:cdat_conda:index [2017/02/23 08:24] jypeter |
other:uvcdat:cdat_conda:index [2024/03/22 09:56] (current) jypeter [Installed versions] Added link to the 2024-03 version |
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| - | ====== UV-CDAT conda-based versions installed by JYP ====== | + | ====== CDAT versions installed by JYP ====== |
| <WRAP center round important 60%> | <WRAP center round important 60%> | ||
| - | This page describes the conda-based versions of UV-CDAT, 2.8.0 and later installed by JYP | + | This page describes the **conda-based** versions of CDAT, ''2.8.0'' and later, installed by JYP |
| - | For versions up to 2.1, check the [[.:installed|UV-CDAT versions installed by JYP]] | + | Follow the [[other:python:starting#ultra_quick-start_on_the_lsce_servers|Ultra quick-start on the LSCE servers]] instructions for actually **using CDAT at LSCE** |
| - | </WRAP> | + | |
| - | + | ||
| - | ===== Useful links ===== | + | |
| - | + | ||
| - | * [[http://uvcdat.llnl.gov/|Official CDAT site]] | + | |
| - | * [[https://github.com/UV-CDAT/uvcdat/wiki/|CDAT wiki]] | + | |
| - | * [[https://github.com/UV-CDAT|CDAT @ github]] | + | |
| - | * [[https://github.com/UV-CDAT/cdms|cdms]] | + | |
| - | * [[https://github.com/UV-CDAT/cdtime|cdtime]] | + | |
| - | * [[https://github.com/UV-CDAT/vcs|vcs]] | + | |
| - | * [[https://github.com/UV-CDAT/cdutil|cdutil]] | + | |
| - | * [[https://github.com/UV-CDAT/genutil|genutil]] | + | |
| - | + | ||
| - | ===== 2.8.0 ===== | + | |
| - | === Installation with Anaconda2 === | + | For technical installation details, check [[..:conda_notes|Installing and maintaining CDAT with conda]] |
| - | <WRAP center round alert 60%> | + | For versions up to 2.1, check the (deprecated) [[..:installed|CDAT versions installed by JYP]] page |
| - | Installing with Miniconda2 (below) rather than Anaconda2 will save disk space! | + | |
| </WRAP> | </WRAP> | ||
| - | <code># Keep a trace of what will be installed, with/without conda-forge | + | ===== Installed versions ===== |
| - | conda create --dry-run -n uvcdat-2.8.0 -c uvcdat uvcdat=2.8.0 > /home/scratch01/jypeter/uvcdat-2.8.0_install_dry_no-forge_160220.txt | + | |
| - | conda create --dry-run -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0 > /home/scratch01/jypeter/uvcdat-2.8.0_install_dry_with-forge_160220.txt | + | |
| - | # Do the actual installation | + | Listed with the most recent version at the top |
| - | conda create -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0</code> | + | |
| - | Lists of installed packages: {{ :other:uvcdat:uvcdat-2.8.0_install_dry_with-forge_160220.txt |with conda-forge}} or {{ :other:uvcdat:uvcdat-2.8.0_install_dry_no-forge_160220.txt |without conda-forge}} | + | ==== Dated (but not outdated!) versions ==== |
| - | Size of ''/home/share/unix_files/cdat/anaconda2'': | + | These versions are based on ''xcdat'' and lots of other useful packages, and the latest Python version available at the date of installation |
| - | * before installation: **2.1G** | + | |
| - | * after installation: **4.6G** | + | |
| - | ==== Installation with Miniconda2 ==== | + | * [[other:uvcdat:cdat_conda:cdat_2024_03|2024-03]] |
| - | Note: after installation, we use **//only// 2.7G** (details below), compared to the 4.6G of the Anaconda2 installation | ||
| - | <code># Keep a trace of what will be installed (with conda-forge) | + | ==== CDAT based versions ==== |
| - | conda create --dry-run -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0 > /home/scratch01/jypeter/uvcdat-2.8.0_install_dry_with-forge_160220.txt | + | |
| - | # Do the actual installation | + | These versions are based on **CDAT** packages (''cdms2'' and friends) that are unfortunately not compatible with //recent// versions of numpy |
| - | conda create -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0</code> | + | |
| - | Lists of installed packages: {{ :other:uvcdat:uvcdat-2.8.0_install_dry_with-forge_160221.txt |List of installed packages}} | + | * [[.:cdat_8_2_1|8.2.1]] |
| - | <code>bash-4.1$ conda info --envs | + | * [[.:cdat_8_1|8.1]] |
| - | # conda environments: | + | |
| - | # | + | |
| - | uvcdat-2.8.0 /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | root * /home/share/unix_files/cdat/miniconda2 | + | |
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | * [[.::cdat_8_0_py2|8.0]] |
| - | 2.7G /home/share/unix_files/cdat/miniconda2 | + | |
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | * [[.:cdat_2_12|2.12]] |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/pkgs | + | * [[.:cdat_2_10|2.10]] |
| - | 2.6G /home/share/unix_files/cdat/miniconda2/pkgs | + | |
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/* | + | * [[.:cdat_2_8_0|2.8.0]] |
| - | 4.4M /home/share/unix_files/cdat/miniconda2/bin | + | |
| - | 4.0K /home/share/unix_files/cdat/miniconda2/conda-bld | + | |
| - | 276K /home/share/unix_files/cdat/miniconda2/conda-meta | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs | + | |
| - | 20K /home/share/unix_files/cdat/miniconda2/etc | + | |
| - | 3.8M /home/share/unix_files/cdat/miniconda2/include | + | |
| - | 99M /home/share/unix_files/cdat/miniconda2/lib | + | |
| - | 4.0K /home/share/unix_files/cdat/miniconda2/LICENSE.txt | + | |
| - | 665M /home/share/unix_files/cdat/miniconda2/pkgs | + | |
| - | 16K /home/share/unix_files/cdat/miniconda2/share | + | |
| - | 8.0K /home/share/unix_files/cdat/miniconda2/ssl | + | |
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/* | ||
| - | 56M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/bin | ||
| - | 1.9M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/conda-meta | ||
| - | 48K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/etc | ||
| - | 420K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/imports | ||
| - | 67M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/include | ||
| - | 1.7G /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/lib | ||
| - | 24K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/man | ||
| - | 3.1M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/mkspecs | ||
| - | 16M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/mod | ||
| - | 3.5M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/plugins | ||
| - | 57M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/share | ||
| - | 4.3M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/ssl | ||
| - | 2.7M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/tests | ||
| - | 12K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/var | ||
| - | 107M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/vistrails</code> | ||
| - | ==== Cloning uvcdat to add specific packages for LSCE ==== | + | ===== Useful links ===== |
| - | + | ||
| - | Note: using hard links, cloning a full environment only adds an extra 100M of disk space | + | |
| - | + | ||
| - | <code>bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 2.7G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | + | ||
| - | bash-4.1$ conda create -n cdatm14 --clone uvcdat-2.8.0 | + | |
| - | [...] | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 2.8G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs/cdatm14 | + | |
| - | 82M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0</code> | + | |
| + | * [[http://uvcdat.llnl.gov/|Official CDAT site]] | ||
| + | * [[https://github.com/UV-CDAT/uvcdat/wiki/|CDAT wiki]] | ||
| + | * [[https://github.com/UV-CDAT|CDAT @ github]] | ||
| + | * [[https://github.com/UV-CDAT/cdms|cdms]] | ||
| + | * [[https://github.com/UV-CDAT/cdtime|cdtime]] | ||
| + | * [[https://github.com/UV-CDAT/vcs|vcs]] | ||
| + | * [[https://github.com/UV-CDAT/cdutil|cdutil]] | ||
| + | * [[https://github.com/UV-CDAT/genutil|genutil]] | ||
| /* standard page footer */ | /* standard page footer */ | ||
other/uvcdat/cdat_conda/index.1487838291.txt.gz · Last modified: 2017/02/23 08:24 by jypeter
