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other:newppl:starting [2020/07/23 12:36] jypeter [The home directory] |
other:newppl:starting [2020/08/20 15:14] jypeter [Accessing the Linux servers from your LSCE deskop] |
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===== Accessing the Linux servers from your LSCE deskop ===== | ===== Accessing the Linux servers from your LSCE deskop ===== | ||
- | ==== Linux or mac desktop ==== | + | [[other:ssh|Use ssh to connect to the servers]] |
- | Just open a terminal and [[#which_linux_servers_should_you_use|use ssh to connect to the appropriate server]] | + | If you are really in a hurry, go directly to the [[other:ssh#useful_aliases|Useful aliases]] section, but it is important that you read the full page at least once! |
- | ==== Windows desktop ==== | ||
- | There should be an //Obelix// shortcut on the left side of your desktop. Double-click on it in order to open a window (e.g. with graphics) environment on one of the obelix servers. Each terminal you will open in this environment will run on the same obelix server. Use ssh to [[#which_linux_servers_should_you_use|connect another server]] | ||
- | |||
- | If there is not yet an //Obelix// shortcut, use the [[other:win7apps#setup|VcXsrv XLaunch]] program to create it | ||
- | |||
- | Note: you can also use [[other:win7apps#putty|Putty]] if you just need text windows, or [[other:win7apps#vcxsrv_windows_x_server|VcXsrv]] or [[other:win7apps#putty|Putty]]+[[other:win7apps#cygwin-x|Cygwin-X]] if you also need graphics | ||
===== Which Linux servers should you use? ===== | ===== Which Linux servers should you use? ===== | ||
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If the Linux server you are working on seems slow, or if you want to get an idea of the resources **you** are using, you should use the ''top'' command | If the Linux server you are working on seems slow, or if you want to get an idea of the resources **you** are using, you should use the ''top'' command | ||
- | <code>jypeter@obelix4 - ...jypeter - 46 >top | + | <code> >hostname |
+ | obelix3 | ||
+ | |||
+ | >top | ||
top - 17:48:51 up 8 days, 23:43, 29 users, load average: 1.22, 1.38, 1.98 | top - 17:48:51 up 8 days, 23:43, 29 users, load average: 1.22, 1.38, 1.98 | ||
Tasks: 324 total, 2 running, 320 sleeping, 2 stopped, 0 zombie | Tasks: 324 total, 2 running, 320 sleeping, 2 stopped, 0 zombie | ||
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PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND | PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND | ||
- | 10193 mpeau 20 0 302m 4336 2272 R 100.0 0.0 7033:08 emacs | + | 10193 john 20 0 302m 4336 2272 R 100.0 0.0 7033:08 emacs |
- | 16504 mpeau 20 0 110m 2008 1228 S 0.7 0.0 0:00.13 tcsh | + | 16504 john 20 0 110m 2008 1228 S 0.7 0.0 0:00.13 tcsh |
- | 26344 dzhu 20 0 1635m 20m 3880 S 0.3 0.1 0:44.90 ipython | + | 26344 jane 20 0 1635m 20m 3880 S 0.3 0.1 0:44.90 ipython |
1 root 20 0 21448 1108 892 S 0.0 0.0 0:01.61 init | 1 root 20 0 21448 1108 892 S 0.0 0.0 0:01.61 init | ||
[...] | [...] | ||
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<code> PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND | <code> PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND | ||
- | 16092 jchang 20 0 8488m 8.1g 7912 R 99.6 25.9 1:41.38 idl | + | 16092 bob 20 0 8488m 8.1g 7912 R 99.6 25.9 1:41.38 idl |
- | 23256 pvait 20 0 232m 70m 2632 S 0.0 0.2 0:01.36 R | + | 23256 john 20 0 232m 70m 2632 S 0.0 0.2 0:01.36 R |
- | 26344 dzhu 20 0 1635m 20m 3880 S 0.0 0.1 0:44.87 ipython | + | 26344 jane 20 0 1635m 20m 3880 S 0.0 0.1 0:44.87 ipython |
- | 10619 astege 20 0 954m 9292 2664 S 0.0 0.0 0:40.67 gedit | + | 10619 bob 20 0 954m 9292 2664 S 0.0 0.0 0:40.67 gedit |
1362 nslcd 20 0 442m 6056 2208 S 0.0 0.0 2:13.98 nslcd | 1362 nslcd 20 0 442m 6056 2208 S 0.0 0.0 2:13.98 nslcd | ||
- | 16238 twang 20 0 128m 5068 2076 S 0.0 0.0 0:00.05 gconfd-2 | + | 10193 john 20 0 302m 4336 2272 R 99.9 0.0 7024:13 emacs |
- | 10193 mpeau 20 0 302m 4336 2272 R 99.9 0.0 7024:13 emacs | + | |
[...]</code> | [...]</code> | ||
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* It is very important to use the correct directories and make it easy for your advisor to find things after you have left | * It is very important to use the correct directories and make it easy for your advisor to find things after you have left | ||
* <wrap em>**Put the source codes, scripts and papers you are writing on a backed up disk**</wrap> | * <wrap em>**Put the source codes, scripts and papers you are writing on a backed up disk**</wrap> | ||
- | * The <wrap em>backed up disk at LSCE</wrap> is [[#the_home_directory|/home/users/your_login]]. You should have a few Gb available on //home// (use the ''quota -s'' command to find out the exact amount) | + | * The <wrap em>backed up disk at LSCE</wrap> is [[#the_home_directory|home directory]]\\ You should have a few Gb available on //home//\\ Use the ''quota -s'' command to find out the exact amount |
* Put **temporary files** on a scratch disk (''scratch01'' at LSCE) | * Put **temporary files** on a scratch disk (''scratch01'' at LSCE) | ||
* Do **NOT** put (big) data files on a backed up disk | * Do **NOT** put (big) data files on a backed up disk | ||
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> quota -s | > quota -s | ||
- | Disk quotas for user jypeter (uid 6369): | + | Disk quotas for user johndoe (uid 6369): |
Filesystem blocks quota limit grace files quota limit grace | Filesystem blocks quota limit grace files quota limit grace | ||
prolix3:/users/ 4658M 4883M 4981M 23503 0 0</code> | prolix3:/users/ 4658M 4883M 4981M 23503 0 0</code> | ||
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Your Linux environment may sometimes stop working correctly because you have exceeded the allowed quota on your disks (check your quotas with ''quota -s''). You can use the following command to get the size of all the directories and files in the current directory, sorted by size: ''du -sh * | sort -rh'' | Your Linux environment may sometimes stop working correctly because you have exceeded the allowed quota on your disks (check your quotas with ''quota -s''). You can use the following command to get the size of all the directories and files in the current directory, sorted by size: ''du -sh * | sort -rh'' | ||
- | <code>jypeter@obelix4 - ...jypeter - 46 >cd /home/scratch01/jypeter | + | <code> >cd /home/scratch01/johndoe |
- | /home/scratch01/jypeter | + | /home/scratch01/johndoe |
- | jypeter@obelix4 - ...jypeter - 47 >du -sh * | sort -rh | + | >du -sh * | sort -rh |
58M GLAC1DHiceF26.nc | 58M GLAC1DHiceF26.nc | ||
47M dashboard | 47M dashboard | ||
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<code> >ssh -v obelix | <code> >ssh -v obelix | ||
OpenSSH_7.4p1, OpenSSL 1.0.2k-fips 26 Jan 2017 | OpenSSH_7.4p1, OpenSSL 1.0.2k-fips 26 Jan 2017 | ||
- | debug1: Reading configuration data /home/users/jypeter/.ssh/config | + | debug1: Reading configuration data /home/users/johndoe/.ssh/config |
debug1: Reading configuration data /etc/ssh/ssh_config | debug1: Reading configuration data /etc/ssh/ssh_config | ||
debug1: /etc/ssh/ssh_config line 58: Applying options for * | debug1: /etc/ssh/ssh_config line 58: Applying options for * | ||
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debug1: Connection established. | debug1: Connection established. | ||
debug1: key_load_public: No such file or directory | debug1: key_load_public: No such file or directory | ||
- | debug1: identity file /home/users/jypeter/.ssh/id_rsa type -1 | + | debug1: identity file /home/users/johndoe/.ssh/id_rsa type -1 |
[...] | [...] | ||
debug1: Entering interactive session. | debug1: Entering interactive session. | ||
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debug1: Sending env LANG = en_US | debug1: Sending env LANG = en_US | ||
Last login: Thu Mar 1 15:52:44 2018 from lsce4078.lsce.ipsl.fr | Last login: Thu Mar 1 15:52:44 2018 from lsce4078.lsce.ipsl.fr | ||
- | Disk quotas for user jypeter (uid 6369): | + | |
- | Filesystem space quota limit grace files quota limit grace | + | > |
- | prolix3:/users 4558M 9766M 10743M 23741 0 0 | + | |
- | jypeter@obelix3 - ...jypeter - 41 > | + | |
</code> | </code> | ||