| Both sides previous revisionPrevious revisionNext revision | Previous revision |
| other:newppl:starting [2024/09/13 16:28] – [Available servers] Updated the IPSL account request link jypeter | other:newppl:starting [2025/08/07 13:51] (current) – [Miscellaneous information] Added link to GATE desk jypeter |
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| * [[https://www.science-accueil.org/en/|Science Accueil]] | * [[https://www.science-accueil.org/en/|Science Accueil]] |
| * [[https://www.science-accueil.org/en/request-services/|Service request page]] | * [[https://www.science-accueil.org/en/request-services/|Service request page]] |
| | * [[https://gate.paris-saclay.fr/en/|GATE desk]] |
| * {{:other:newppl:uvsq-guide-du-personnel-nov2019.pdf|Guide du Personnel UVSQ}} | * {{:other:newppl:uvsq-guide-du-personnel-nov2019.pdf|Guide du Personnel UVSQ}} |
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| ===== Which programs should you use? ===== | ===== Which programs should you use? ===== |
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| Your advisor will let you know which (version of which) programs you should use. Some programs are available by default, and you have to use the ''module'' command to access other programs. | Your advisor will let you know which (version of which) programs you should use. Some programs are available by default, and you have to use the ''[[other:newppl:starting#using_module_to_access_optional_programs|module]]'' command to access other programs (or access a specific version of a program). |
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| ==== Which program am I using? ==== | ==== Which program am I using? ==== |
| ==== Using module to access optional programs ==== | ==== Using module to access optional programs ==== |
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| Most useful ''[[https://modules.readthedocs.io/|module]]'' options: | === Documentation === |
| | |
| | * [[https://documentations.ipsl.fr/spirit/common/module_command.html|IPSL Meso documentation]] |
| | * [[https://modules.readthedocs.io/|Full and official module documentation]] |
| | |
| | === Most useful module options === |
| * ''module list'': list the currently loaded modules | * ''module list'': list the currently loaded modules |
| * ''module avail [mod_name]'': list the available modules (or only the ones with a name starting with ''mod_name'') | * ''module avail [mod_name]'': list the available modules (or only the ones with a name starting with ''mod_name'') |
| | * '' module avail -l 2>&1 | grep subname'': list the modules that have ''subname'' in their name, and their installation date |
| | * <wrap hi>This only works in a //bash// shell!</wrap> In a //tcsh// shell, start by invoking a //bash// shell with ''bash -l'' |
| * ''module load module_a ... module_n'': load modules (automatically including dependencies) | * ''module load module_a ... module_n'': load modules (automatically including dependencies) |
| * ''module load module_a'': load default version of //module_a// | * ''module load module_a'': load default version of //module_a// |
| * ''module purge'': remove all modules | * ''module purge'': remove all modules |
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| Detailed example: | === Detailed example === |
| <code> > which ncview | <code> > which ncview |
| ncview: Command not found. | ncview: Command not found. |
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| > which ncdump | > which ncdump |
| /usr/local/install/netcdf-4.3.2/bin/ncdump</code> | /usr/local/install/netcdf-4.3.2/bin/ncdump |
| | |
| | > bash -l |
| | $ module avail -l 2>&1 | grep gcc |
| | binutils/2.43.1-gcc14-acc 2025/01/27 21:09:36 |
| | gcc/14.2.0-openacc 2025/01/24 8:11:14 |
| | gcc/8.3.0 2021/04/21 8:27:35 |
| | netcdf/4.9.2-gcc14-acc 2025/01/27 22:02:57 |
| | netcdf/4.9.2-gcc8 2024/06/05 20:49:36 |
| | R/4.0.3-gcc8 2022/02/03 12:53:55</code> |
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| ===== Useful documentation for beginners ===== | ===== Useful documentation for beginners ===== |
| * Useful Linux commands for working with (potentially big) text files ({{:other:newppl:houchesa4_updated.pdf}}) | * Useful Linux commands for working with (potentially big) text files ({{:other:newppl:houchesa4_updated.pdf}}) |
| * Using [[other:ssh|ssh]] and [[other:ssh#copying_files_with_scp|scp]] | * Using [[other:ssh|ssh]] and [[other:ssh#copying_files_with_scp|scp]] |
| | |
| | * See also the //old// [[http://www.idris.fr/formations/utilisation-unix/unix-u-cours.html|IDRIS (advanced) Linux training]] (French tutorial) |
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| ==== Text editors ==== | ==== Text editors ==== |
| * Use ''[[#using_module_to_access_optional_programs|module]] load cdo'' on the LSCE and IPSL servers | * Use ''[[#using_module_to_access_optional_programs|module]] load cdo'' on the LSCE and IPSL servers |
| * [[http://nco.sourceforge.net/#RTFM|netCDF Operator]] (//NCO// operators) | * [[http://nco.sourceforge.net/#RTFM|netCDF Operator]] (//NCO// operators) |
| * Use ''[[#using_module_to_access_optional_programs|module]] load cdo'' on the LSCE and IPSL servers | * Use ''[[#using_module_to_access_optional_programs|module]] load nco'' on the LSCE and IPSL servers |
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| Check the [[other:python:jyp_steps#using_netcdf_files_with_python|dedicated section]] of the //Python// page | Check the [[other:python:jyp_steps#using_netcdf_files_with_python|dedicated section]] of the //Python// page |
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| ==== Programming languages ==== | ==== Programming languages, parallelism, ... ==== |
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| * [[other:index#python_notes|JYP's Python notes]] | * [[other:index#python_notes|JYP's Python notes]] |
| | * [[http://www.idris.fr/eng/formations/supports_de_cours-eng.html|IDRIS classes and tutorials]] |
| |
| ===== Getting help (from the LSCE system administrators) ===== | ===== Getting help (from the LSCE system administrators) ===== |
