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other:python:matplotlib_by_jyp [2020/02/11 11:00] jypeter [Starting (and more) with matplotlib] |
other:python:matplotlib_by_jyp [2023/09/27 10:53] jypeter Updated "Anatomy" link |
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====== Working with matplotlib (JYP version) ====== | ====== Working with matplotlib (JYP version) ====== | ||
+ | |||
+ | <note tip>Note: [[https://matplotlib.org/cheatsheets/|Matplotlib cheatsheets]]</note> | ||
**Summary**: there are lots of python libraries that you can use for plotting, but Matplotlib has become a //de facto// standard | **Summary**: there are lots of python libraries that you can use for plotting, but Matplotlib has become a //de facto// standard | ||
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<wrap hi>A good way to start with matplotlib</wrap> is to quickly read this section, practice, and read this section again (and again) | <wrap hi>A good way to start with matplotlib</wrap> is to quickly read this section, practice, and read this section again (and again) | ||
- | - Have a quick look at the [[https://matplotlib.org/gallery/index.html|matplotlib gallery]] to get an idea of all you can do with matplotlib. Later, when you need to plot something, go back to the gallery to find some examples that are close to what you need and click on them to view their source code | + | - Have a quick look at the [[https://matplotlib.org/stable/gallery/index.html|matplotlib gallery]] to get an idea of all you can do with matplotlib. Later, when you need to plot something, go back to the gallery to find some examples that are close to what you need and click on them to view their source code |
* some examples are more //pythonic// (ie object oriented) than others, and some examples mix different styles of coding, which can be quite confusing. Try to [[http://matplotlib.org/faq/usage_faq.html#coding-styles|use an object oriented way of doing things]]! | * some examples are more //pythonic// (ie object oriented) than others, and some examples mix different styles of coding, which can be quite confusing. Try to [[http://matplotlib.org/faq/usage_faq.html#coding-styles|use an object oriented way of doing things]]! | ||
- Use the free hints provided by JY! | - Use the free hints provided by JY! | ||
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mid_plot = my_page.add_subplot(3, 1, 2) | mid_plot = my_page.add_subplot(3, 1, 2) | ||
bot_plot = my_page.add_subplot(3, 1, 3)</code> | bot_plot = my_page.add_subplot(3, 1, 3)</code> | ||
- | * creating an //array of plots// with ''subplots'' is **more efficient** than ''add_subplot'' when there are lots of plots on a page<code>plot_array = my_page.subplots(3, 1) | + | * creating an //array of plots// with ''subplots'' is **more efficient** than ''add_subplot'', when there are lots of plots on a page<code>plot_array = my_page.subplots(3, 1) |
top_plot = plot_array[0] | top_plot = plot_array[0] | ||
mid_plot = plot_array[1] | mid_plot = plot_array[1] | ||
bot_plot = plot_array[2]</code> | bot_plot = plot_array[2]</code> | ||
- | * it is **even more efficient** to create a //figure// and //axes// with a single line: | + | * it is **even more efficient** to create a //figure// **and** //axes// with a single line: |
* one plot on one page: ''my_page, my_plot = **plt**.subplots()'' | * one plot on one page: ''my_page, my_plot = **plt**.subplots()'' | ||
* three plots on one A4 portrait page:\\ <code> | * three plots on one A4 portrait page:\\ <code> | ||
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mid_plot = plot_array[1] | mid_plot = plot_array[1] | ||
bot_plot = plot_array[2] | bot_plot = plot_array[2] | ||
+ | </code> | ||
+ | * if you need to specify the same additional //keyword// parameters (that will be passed //behind the scene// to the ''add_subplot'' function), you can use the ''subplot_kw'' parameter. For example, if all the plots will be created with cartopy, using the //Robinson// projection, the example above becomes:\\ <code> | ||
+ | my_page, plot_array = plt.subplots(nrows=3, ncols=1, | ||
+ | figsize=(8.3, 11.), # A4 portrait | ||
+ | subplot_kw=dict(projection=ccrs.Robinson())) | ||
</code> | </code> | ||
* use [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.add_axes|my_page.add_axes(...)]] to add an axis in an arbirary location of the page\\ ''my_page.add_axes([left, bottom, width, height])'' | * use [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.add_axes|my_page.add_axes(...)]] to add an axis in an arbirary location of the page\\ ''my_page.add_axes([left, bottom, width, height])'' | ||
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* ''my_plot.clear()'' or ''my_plot.cla()'': clear the (current) axis | * ''my_plot.clear()'' or ''my_plot.cla()'': clear the (current) axis | ||
- some resources for having multiple plots on the same figure | - some resources for having multiple plots on the same figure | ||
- | * [[https://matplotlib.org/gallery/recipes/create_subplots.html#sphx-glr-gallery-recipes-create-subplots-py|Easily creating subplots]] | + | * [[https://matplotlib.org/stable/gallery/recipes/create_subplots.html|Easily creating subplots]] |
* [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.add_subplot|fig.add_subplot(...)]] | * [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.add_subplot|fig.add_subplot(...)]] | ||
* [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.add_axes|fig.add_axes(...)]] | * [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.add_axes|fig.add_axes(...)]] | ||
* [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplot.html|plt.subplot(...)]] | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplot.html|plt.subplot(...)]] | ||
- | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplots.html|plt.subplots(...)]] with an **s** at the end ([[https://matplotlib.org/gallery/subplots_axes_and_figures/subplots_demo.html|demo]]) | + | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplots.html|plt.subplots(...)]] with an **s** at the end ([[https://matplotlib.org/stable/gallery/subplots_axes_and_figures/subplots_demo.html|demo]]) |
* [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplots_adjust.html|subplots_adjust]] can be used to change the overall boundaries of the subplots on the figure, and the spacing between the subplots\\ ''plt.subplots_adjust(left=None, bottom=None, right=None, top=None, wspace=None, hspace=None)''\\ or ''my_page.subplots_adjust(left=None, bottom=None, right=None, top=None, wspace=None, hspace=None)'' | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplots_adjust.html|subplots_adjust]] can be used to change the overall boundaries of the subplots on the figure, and the spacing between the subplots\\ ''plt.subplots_adjust(left=None, bottom=None, right=None, top=None, wspace=None, hspace=None)''\\ or ''my_page.subplots_adjust(left=None, bottom=None, right=None, top=None, wspace=None, hspace=None)'' | ||
* ''hspace''/''wspace'' is the amount of height/width between the subplots | * ''hspace''/''wspace'' is the amount of height/width between the subplots | ||
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- Get the current size information: ''pl_x_bottomleft, pl_y_bottomleft, pl_width, pl_height = my_plot.get_position().bounds'' | - Get the current size information: ''pl_x_bottomleft, pl_y_bottomleft, pl_width, pl_height = my_plot.get_position().bounds'' | ||
- Set the new size: e.g reduce the height with ''my_plot.set_position( (pl_x_bottomleft, pl_y_bottomleft, pl_width, pl_height * 0.5) )'' | - Set the new size: e.g reduce the height with ''my_plot.set_position( (pl_x_bottomleft, pl_y_bottomleft, pl_width, pl_height * 0.5) )'' | ||
- | * [[https://matplotlib.org/gallery/index.html#subplots-axes-and-figures|Subplots, axes and figures]] gallery | + | * [[https://matplotlib.org/stable/gallery/index.html#subplots-axes-and-figures|Subplots, axes and figures]] gallery |
* [[https://matplotlib.org/tutorials/intermediate/gridspec.html#sphx-glr-tutorials-intermediate-gridspec-py|Customizing Figure Layouts Using GridSpec and Other Functions]], [[https://matplotlib.org/tutorials/intermediate/constrainedlayout_guide.html|constrained layout]] and [[https://matplotlib.org/tutorials/intermediate/tight_layout_guide.html|tight layout]] | * [[https://matplotlib.org/tutorials/intermediate/gridspec.html#sphx-glr-tutorials-intermediate-gridspec-py|Customizing Figure Layouts Using GridSpec and Other Functions]], [[https://matplotlib.org/tutorials/intermediate/constrainedlayout_guide.html|constrained layout]] and [[https://matplotlib.org/tutorials/intermediate/tight_layout_guide.html|tight layout]] | ||
- use [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.savefig.html|my_page.savefig(...)]] to save a figure | - use [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.savefig.html|my_page.savefig(...)]] to save a figure | ||
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* ''my_page.savefig('my_plot.png', dpi=200, transparent=True, bbox_inches='tight')'': save the figure to a png file at a higher resolution than the default (default is 100 dots per inch), with a transparent background and no extra space around the figure | * ''my_page.savefig('my_plot.png', dpi=200, transparent=True, bbox_inches='tight')'': save the figure to a png file at a higher resolution than the default (default is 100 dots per inch), with a transparent background and no extra space around the figure | ||
- **display** the figure and its plots, and **start interacting** (zooming, panning...) with them:\\ ''plt.show()'' | - **display** the figure and its plots, and **start interacting** (zooming, panning...) with them:\\ ''plt.show()'' | ||
- | - it may be hard to (remember how to) **work with colors //and colorbars//**. Some examples from the [[https://matplotlib.org/gallery/index.html|matplotlib Gallery]] can help you!\\ Note: A **reversed version of each colormap** is available by appending ''_r'' to the name, e.g., ''viridis_r'' | + | - it may be hard to (remember how to) **work with colors //and colorbars//**. Some examples from the [[https://matplotlib.org/stable/gallery/index.html#color|matplotlib Gallery]] can help you!\\ Note: A **reversed version of each colormap** is available by appending ''_r'' to the name, e.g., ''viridis_r'' |
- | * [[https://matplotlib.org/gallery/specialty_plots/leftventricle_bulleye.html|leftventricle_bulleye.py]]: associating different types of colormaps to a plot and colorbar | + | * [[https://matplotlib.org/stable/gallery/specialty_plots/leftventricle_bulleye.html|leftventricle_bulleye.py]]: associating different types of colormaps to a plot and colorbar |
* [[https://matplotlib.org/examples/api/colorbar_only.html|colorbar_only.py]]: the different types of colorbars (or plotting only a colorbar) | * [[https://matplotlib.org/examples/api/colorbar_only.html|colorbar_only.py]]: the different types of colorbars (or plotting only a colorbar) | ||
- | * [[https://matplotlib.org/gallery/color/colormap_reference.html|colormaps_reference.py]]: pre-defined colormaps | + | * [[https://matplotlib.org/stable/gallery/color/colormap_reference.html|colormaps_reference.py]]: pre-defined colormaps |
- | * [[https://matplotlib.org/gallery/color/named_colors.html|named_colors.py]]: named colors | + | * [[https://matplotlib.org/stable/gallery/color/named_colors.html|named_colors.py]]: named colors |
* More details about colors and colorbars below, in the [[#useful_matplotlib_reference_pages|Useful matplotlib reference pages]] section and the [[#graphics_related_resources|Graphics related resources]] section | * More details about colors and colorbars below, in the [[#useful_matplotlib_reference_pages|Useful matplotlib reference pages]] section and the [[#graphics_related_resources|Graphics related resources]] section | ||
- if you don't see a part of what you have plotted, maybe it's hidden behind other elements! Use the [[https://matplotlib.org/examples/pylab_examples/zorder_demo.html|zorder parameter]] to explicitly **specify the plotting order/layers/depth** | - if you don't see a part of what you have plotted, maybe it's hidden behind other elements! Use the [[https://matplotlib.org/examples/pylab_examples/zorder_demo.html|zorder parameter]] to explicitly **specify the plotting order/layers/depth** | ||
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- you can use **transparency** to partially show what is behind some markers or other objects. Many //artists// accept the ''alpha'' parameter where ''0.0'' means that the object is completely transparent, and ''1.0'' means completely opaque\\ e.g. ''my_plot.scatter(..., alpha=0.7)'' | - you can use **transparency** to partially show what is behind some markers or other objects. Many //artists// accept the ''alpha'' parameter where ''0.0'' means that the object is completely transparent, and ''1.0'' means completely opaque\\ e.g. ''my_plot.scatter(..., alpha=0.7)'' | ||
- sometimes the results of the python/matplolib commands are displayed immediately, sometimes not. It depends if you are in [[http://matplotlib.org/faq/usage_faq.html#what-is-interactive-mode|interactive or non-interactive]] mode | - sometimes the results of the python/matplolib commands are displayed immediately, sometimes not. It depends if you are in [[http://matplotlib.org/faq/usage_faq.html#what-is-interactive-mode|interactive or non-interactive]] mode | ||
- | - if your matplotlib is executed in a batch script, it will generate an error when trying to create (''show()'') a plot, because matplotlib expects to be able to display the figure on a screen by default. | + | - if your matplotlib is executed in a batch script, it will generate an error when trying to create (''show()'') a plot, because matplotlib expects to be able to display the figure on a screen (with an X server running) by default.\\ Find out how to deal with this in [[other:python:matplotlib_by_jyp#creating_a_plot_offline|Creating a plot offline]]. |
- | * Check how you can [[https://matplotlib.org/faq/howto_faq.html?highlight=web#generate-images-without-having-a-window-appear|generate images offline]] | + | |
- the documentation may mention [[http://matplotlib.org/faq/usage_faq.html#what-is-a-backend|backends]]. What?? Basically, you use python commands to create a plot, and the backend is the //thing// that will render your plot on the screen or in a file (png, pdf, etc...) | - the documentation may mention [[http://matplotlib.org/faq/usage_faq.html#what-is-a-backend|backends]]. What?? Basically, you use python commands to create a plot, and the backend is the //thing// that will render your plot on the screen or in a file (png, pdf, etc...) | ||
- Read the [[https://github.com/rougier/matplotlib-tutorial|Matplotlib tutorial by Nicolas Rougier]] | - Read the [[https://github.com/rougier/matplotlib-tutorial|Matplotlib tutorial by Nicolas Rougier]] | ||
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* The ''plot'' function will be faster for scatterplots where markers don't vary in size or color | * The ''plot'' function will be faster for scatterplots where markers don't vary in size or color | ||
* [[https://matplotlib.org/api/_as_gen/matplotlib.axes.Axes.contourf.html|contour(...) and contourf(...)]]: draw contour lines and filled contours | * [[https://matplotlib.org/api/_as_gen/matplotlib.axes.Axes.contourf.html|contour(...) and contourf(...)]]: draw contour lines and filled contours | ||
- | * X and Y axes parameters | + | * **X and Y axes parameters** (see also [[https://matplotlib.org/stable/gallery/showcase/anatomy.html|Anatomy of a figure]]): |
- | * Axis range: ''my_plot.set_xlim(x_leftmost_value, x_rightmost_value)'' | + | * **Axis range**: ''my_plot.set_xlim(x_leftmost_value, x_rightmost_value)'' |
* Use the leftmost and rightmost values to specify the orientation of the axis (i.e the rightmost value can be smaller than the leftmost) | * Use the leftmost and rightmost values to specify the orientation of the axis (i.e the rightmost value can be smaller than the leftmost) | ||
- | * Axis label: ''my_plot.set_xlabel(x_label_string, fontsize=axis_label_fontsize)'' | + | * **Axis label**: ''my_plot.set_xlabel(x_label_string, fontsize=axis_label_fontsize)'' |
- | * Use the extra labelpad parameter to move the label closer (negative value) to the axis or farther (positive value): e.g. ''my_plot.set_xlabel('A closer label', labelpad=-20'' | + | * Use the extra labelpad parameter to move the label closer (negative value) to the axis or farther (positive value): e.g. ''my_plot.set_xlabel('A closer label', labelpad=-20'') |
- | * Major (and minor) tick marks location: ''my_plot.set_xticks(x_ticks_values, minor=False)'' | + | * <wrap hi>cartopy dirty trick</wrap>: you have to use ''my_plot.set_xticks([])'', otherwise the X axis label will not be printed |
+ | * [[https://stackoverflow.com/questions/35479508/cartopy-set-xlabel-set-ylabel-not-ticklabels|Trick source]] | ||
+ | * Trick needs to be used with ''cartopy 0.17.0''\\ Remember to update/remove this information in the future | ||
+ | * Major (and minor) **tick marks location**: ''my_plot.set_xticks(x_ticks_values, minor=False)'' ([[https://matplotlib.org/stable/api/_as_gen/matplotlib.axes.Axes.set_xticks.html|set_xticks]]) | ||
* Use an empty list if you don't want tick marks: ''my_plot.set_xticks([])'' | * Use an empty list if you don't want tick marks: ''my_plot.set_xticks([])'' | ||
- | * Tick labels (if you don't want the default values): ''my_plot.set_xticklabels(x_ticks_labels, minor=False, fontsize=ticklabels_fontsize)'' | + | * **Tick labels**: ''my_plot.set_xticklabels(x_tick_labels, minor=False, fontsize=ticklabels_fontsize)'' ([[https://matplotlib.org/stable/api/_as_gen/matplotlib.axes.Axes.set_xticklabels.html|set_xticklabels]]) |
- | * ''x_ticks_labels'' is a list of strings that has the same length as ''x_ticks_values''. Use an empty string in the positions where you don't want a label | + | * If you do not specify labels, the //default labels// will just be the values specifying the ticks' location |
+ | * ''x_tick_labels'' is a list of strings that has the same length as ''x_ticks_values''.\\ Use an empty string in the positions where you don't want a label | ||
+ | * The default numerical labels may be too long, due to numerical approximations. You can try to explicitly round the values, or generate correct label strings from the values\\ <code>>>> x_tick_values = np.arange(0, 1, 0.2) | ||
+ | >>> x_tick_values.tolist() | ||
+ | [0.0, 0.2, 0.4, 0.6000000000000001, 0.8] | ||
+ | >>> x_tick_values.round(decimals=1).tolist() | ||
+ | [0.0, 0.2, 0.4, 0.6, 0.8] | ||
+ | >>> x_tick_labels = [ '%.1f' % (t_val,) for t_val in x_tick_values ] | ||
+ | >>> x_tick_labels | ||
+ | ['0.0', '0.2', '0.4', '0.6', '0.8'] | ||
+ | >>> x_tick_labels[0] = 'START' | ||
+ | >>> x_tick_labels[-1] = 'END' | ||
+ | >>> x_tick_labels | ||
+ | ['START', '0.2', '0.4', '0.6', 'END'] | ||
+ | </code> | ||
+ | * You can also use fancy [[https://matplotlib.org/stable/gallery/ticks_and_spines/tick-formatters.html|tick formatters]] | ||
* Many more options for ticks, labels, orientation, ... | * Many more options for ticks, labels, orientation, ... | ||
+ | * **Grid lines**: | ||
+ | * Their position is determined by the values used for ''set_xticks'' and ''set_yticks'' | ||
+ | * Activate all (horizontal **and** vertical) grid lines with: ''my_plot.grid(True, linestyle="%%--%%", linewidth=0.5, color='.25',zorder=some_value)''\\ You can adjust the ''zorder'' value to determine if the grid lines should be above or below other parts of the plot! | ||
+ | * Plot only the horizontal **or** vertical lines with:\\ ''ax.yaxis.grid(True)''\\ or ''ax.xaxis.grid(True)'' | ||
+ | * Note: <wrap hi>special case of //cartopy// plots</wrap>: the location of the gridlines, and the properties of the associated labels are determined by ''myplot.gridlines''! See [[https://scitools.org.uk/cartopy/docs/latest/matplotlib/gridliner.html|Cartopy map gridlines and tick labels]] | ||
* [[https://matplotlib.org/api/_as_gen/matplotlib.lines.Line2D.html|line]] parameters | * [[https://matplotlib.org/api/_as_gen/matplotlib.lines.Line2D.html|line]] parameters | ||
* ''linestyle'': ''solid'', ''None'', [[https://matplotlib.org/api/_as_gen/matplotlib.lines.Line2D.html#matplotlib.lines.Line2D.set_linestyle|other]] ([[https://matplotlib.org/examples/lines_bars_and_markers/line_styles_reference.html|default styles example]], [[https://matplotlib.org/examples/lines_bars_and_markers/linestyles.html|custom styles example]]) | * ''linestyle'': ''solid'', ''None'', [[https://matplotlib.org/api/_as_gen/matplotlib.lines.Line2D.html#matplotlib.lines.Line2D.set_linestyle|other]] ([[https://matplotlib.org/examples/lines_bars_and_markers/line_styles_reference.html|default styles example]], [[https://matplotlib.org/examples/lines_bars_and_markers/linestyles.html|custom styles example]]) | ||
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* ''mpl.rcParams['lines.linewidth']'' => 1.5 | * ''mpl.rcParams['lines.linewidth']'' => 1.5 | ||
* Other marker attributes. For ''plot'', all the markers have the same attributes, and for ''scatter'' the attributes can be the same, or specified for each marker | * Other marker attributes. For ''plot'', all the markers have the same attributes, and for ''scatter'' the attributes can be the same, or specified for each marker | ||
- | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.plot.html|plot(...)]]: //fmt// (see documentation) or ''marker'' and ''markerfacecolor''/''mfc'' (and ''markerfacecoloralt''/''mfcalt'' for dual color markers), ''markersize'', ''markeredgewidth''/''mew'', ''markeredgecolor'' (use ''markeredgecolor='none''' if you don't want to plot the edge of the markers), ''fillstyle'' (''full'', ''None'', [[https://matplotlib.org/gallery/lines_bars_and_markers/marker_fillstyle_reference.html|other]]) | + | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.plot.html|plot(...)]]: //fmt// (see documentation) or ''marker'' and ''markerfacecolor''/''mfc'' (and ''markerfacecoloralt''/''mfcalt'' for dual color markers), ''markersize'', ''markeredgewidth''/''mew'', ''markeredgecolor'' (use ''markeredgecolor='none''' if you don't want to plot the edge of the markers), ''fillstyle'' (''full'', ''None'', [[https://matplotlib.org/stable/gallery/lines_bars_and_markers/marker_reference.htm|other]]) |
* [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.scatter.html|scatter(...)]]: ''marker'' (marker type), ''c'' (color), ''s'' (size), ''linewidths'' (linewidth of the marker edges), ''edgecolors'' | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.scatter.html|scatter(...)]]: ''marker'' (marker type), ''c'' (color), ''s'' (size), ''linewidths'' (linewidth of the marker edges), ''edgecolors'' | ||
- | * [[https://matplotlib.org/api/colors_api.html|colors]] and colormaps | + | * [[https://matplotlib.org/stable/api/colors_api.html|colors]] and colormaps |
- | * [[https://matplotlib.org/gallery/color/color_demo.html|color demo]] | + | * [[https://matplotlib.org/stable/gallery/color/color_demo.html|color demo]] |
- | * [[https://matplotlib.org/examples/color/named_colors.html|named colors]] | + | * [[https://matplotlib.org/stable/gallery/color/named_colors.html#sphx-glr-gallery-color-named-colors-py|named colors]] |
+ | * [[https://www.w3schools.com/colors/colors_picker.asp|HTML color picker]] and different ways of choosing colors | ||
* Reverting the colors: add ''_r'' at the end of the colormap name | * Reverting the colors: add ''_r'' at the end of the colormap name | ||
* Number of colors in the //my_cmap// colormap (usually 256): ''my_cmap.N'' | * Number of colors in the //my_cmap// colormap (usually 256): ''my_cmap.N'' | ||
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* ''my_cmap.set_over(color='k')'': color to be used for //high out-of-range values// **if** ''extend'' is specified and is //'both'// or //'max'//. Default color is ''my_cmap(my_cmap.N - 1)'' | * ''my_cmap.set_over(color='k')'': color to be used for //high out-of-range values// **if** ''extend'' is specified and is //'both'// or //'max'//. Default color is ''my_cmap(my_cmap.N - 1)'' | ||
* ''my_cmap.set_under(color='k')'': color to be used for //low out-of-range values// **if** ''extend'' is specified and is //'both'// or //'min'//. Default color is ''my_cmap(0)'' | * ''my_cmap.set_under(color='k')'': color to be used for //low out-of-range values// **if** ''extend'' is specified and is //'both'// or //'min'//. Default color is ''my_cmap(0)'' | ||
- | * [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.colorbar|colorbar]] | + | * [[https://matplotlib.org/stable/api/figure_api.html#matplotlib.figure.Figure.colorbar|colorbar]] (see also the [[https://matplotlib.org/stable/api/colorbar_api.html|colorbar api]]) |
- | * [[https://matplotlib.org/gallery/subplots_axes_and_figures/colorbar_placement.html|Placing colorbars demo]] | + | * [[https://matplotlib.org/stable/gallery/subplots_axes_and_figures/colorbar_placement.html|Placing colorbars demo]] |
- | * [[https://matplotlib.org/gallery/images_contours_and_fields/contourf_demo.html|contourf + colorbar demo]] | + | * [[https://matplotlib.org/stable/gallery/images_contours_and_fields/contourf_demo.html|contourf + colorbar demo]] |
* [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.text.html|text(...)]] and [[https://matplotlib.org/tutorials/text/annotations.html|annotations]] | * [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.text.html|text(...)]] and [[https://matplotlib.org/tutorials/text/annotations.html|annotations]] | ||
* Some titles: | * Some titles: | ||
- | * [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.suptitle|Figure title]]: ''my_figure.suptitle('Figure title', x=xloc_in_normalized_coordinates, y=yloc_in_normalized_coordinates, ...)'' | + | * **Title at the top of the page**: [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html#matplotlib.figure.Figure.suptitle|Figure title]]: ''my_figure.suptitle('Figure title', x=xloc_in_normalized_coordinates, y=yloc_in_normalized_coordinates, ...)'' |
- | * [[https://matplotlib.org/api/axes_api.html#axis-labels-title-and-legend|Axis Labels, title, and legend]]: ''my_plot.set_title('Plot title', ...)'' | + | * **Title above each plot**:[[https://matplotlib.org/api/axes_api.html#axis-labels-title-and-legend|Axis Labels, title, and legend]]: ''my_plot.set_title('Plot title', ...)'' |
+ | * [[https://matplotlib.org/stable/gallery/text_labels_and_annotations/titles_demo.html|Title and labels positions demo]] | ||
* ''fontsize'': size in points, or (better!) string specifying a relative size (''xx-small'', ''x-small'', ''small'', ''medium'', ''large'', ''x-large'', ''xx-large'') | * ''fontsize'': size in points, or (better!) string specifying a relative size (''xx-small'', ''x-small'', ''small'', ''medium'', ''large'', ''x-large'', ''xx-large'') | ||
- | * [[https://matplotlib.org/api/text_api.html#matplotlib.text.Text|all the text properties]] | + | * [[https://matplotlib.org/stable/api/text_api.html|all the text properties]] |
- | * [[https://matplotlib.org/api/pyplot_api.html#matplotlib.pyplot.legend|legend(...)]] ([[https://matplotlib.org/examples/pylab_examples/legend_demo3.html|legend demo]], [[https://matplotlib.org/users/legend_guide.html|advanced legend guide]]) | + | * [[https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.legend.html|legend(...)]] ([[https://matplotlib.org/stable/gallery/text_labels_and_annotations/legend_demo.html|legend demo]], [[https://matplotlib.org/stable/tutorials/intermediate/legend_guide.html|advanced legend guide]]) |
* The legend will //show// the lines (or other objects) that were associated with a //label// with the ''label='' keyword when creating/updating a plot | * The legend will //show// the lines (or other objects) that were associated with a //label// with the ''label='' keyword when creating/updating a plot | ||
* If there are some elements of a plot that you do not want to associate with a legend (e.g. there are several lines with the same color and markers, but you want to plot the legend only once), do not specify a ''label='' keyword for these elements, or add a ''_'' at the front of the label strings | * If there are some elements of a plot that you do not want to associate with a legend (e.g. there are several lines with the same color and markers, but you want to plot the legend only once), do not specify a ''label='' keyword for these elements, or add a ''_'' at the front of the label strings | ||
Line 174: | Line 205: | ||
* e.g. with [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplots_adjust.html|subplots_adjust]], ''plt.subplots_adjust(right=0.75)'' will make all the plots use 75% on the left of the page, and leave 25% on the right for the legend | * e.g. with [[https://matplotlib.org/api/_as_gen/matplotlib.pyplot.subplots_adjust.html|subplots_adjust]], ''plt.subplots_adjust(right=0.75)'' will make all the plots use 75% on the left of the page, and leave 25% on the right for the legend | ||
* The [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html|figure(...)]] and the associated methods | * The [[https://matplotlib.org/api/_as_gen/matplotlib.figure.Figure.html|figure(...)]] and the associated methods | ||
- | * The [[https://matplotlib.org/api/axes_api.html|axes]] and the associated methods | + | * The [[https://matplotlib.org/stable/api/axes_api.html|axes]] and the associated methods |
* [[https://matplotlib.org/tutorials/introductory/customizing.html#matplotlib-rcparams|matplotlib default config/settings]] can be queried and updated | * [[https://matplotlib.org/tutorials/introductory/customizing.html#matplotlib-rcparams|matplotlib default config/settings]] can be queried and updated | ||
* example: the default figure size (inches) is ''mpl.rcParams['figure.figsize']'' (''[6.4, 4.8]'') | * example: the default figure size (inches) is ''mpl.rcParams['figure.figsize']'' (''[6.4, 4.8]'') | ||
* current settings' file: ''mpl.matplotlib_fname()'' | * current settings' file: ''mpl.matplotlib_fname()'' | ||
- | * [[https://matplotlib.org/api/animation_api.html|Animations]] ([[https://matplotlib.org/gallery/index.html#animation|demo]]) | + | * [[https://matplotlib.org/api/animation_api.html|Animations]] ([[https://matplotlib.org/stable/gallery/index.html#animation|demo]]) |
===== Misc Matplotlib tricks ===== | ===== Misc Matplotlib tricks ===== | ||
- | * Specifying the background color of a plot (e.g. when plotting a masked variable and you don't want the masked areas to be white) | + | ==== Creating a plot offline ==== |
- | * ''# make the background dark gray (call this before the contourf)''\\ ''plt.gca().patch.set_color('.25')''\\ ''plt.contourf(d)''\\ ''plt.show()'' | + | |
- | * [[https://stackoverflow.com/questions/9797520/masking-part-of-a-contourf-plot-in-matplotlib|trick source]] | + | You may need to create a plot offline when your network connection is not good enough, you don't have an X server running to display the plot (possibly because the script is running on a cluster), etc... This is easily done with the following code: |
+ | |||
+ | <code># offline_plot = False | ||
+ | offline_plot = True | ||
+ | |||
+ | import matplotlib as mpl | ||
+ | if offline_plot: | ||
+ | # Define the graphic back-end BEFORE importing pyplot | ||
+ | mpl.use('Agg') | ||
+ | |||
+ | # Import the rest of the matplotlib based modules | ||
+ | import matplotlib.pyplot as plt | ||
+ | |||
+ | [ ...your actual code... ] | ||
+ | |||
+ | # Done at last! Save the result | ||
+ | my_page.savefig(out_name, dpi=300, transparent=True, bbox_inches='tight') | ||
+ | |||
+ | if not offline_plot: | ||
+ | # Enter the interactive mode to display the plot | ||
+ | plt.show()</code> | ||
+ | |||
+ | Note: see also [[https://matplotlib.org/stable/gallery/user_interfaces/canvasagg.html|CanvasAgg demo]] for a pure offline plot, and [[https://matplotlib.org/faq/howto_faq.html?highlight=web#howto-webapp|How to use Matplotlib in a web application server]]. But the code above is much easier! | ||
+ | |||
+ | ==== Specifying the background color of a plot ==== | ||
+ | |||
+ | e.g. You need to plot a masked variable, but you don't want the masked areas to be white | ||
+ | |||
+ | <code># make the background dark gray (call this before the contourf) | ||
+ | plt.gca().patch.set_color('.25') | ||
+ | plt.contourf(d) | ||
+ | plt.show()</code> | ||
+ | |||
+ | [[https://stackoverflow.com/questions/9797520/masking-part-of-a-contourf-plot-in-matplotlib|trick source]] | ||
+ | |||
+ | ===== Unsorted matplotlib stuff ===== | ||
+ | |||
+ | Some useful notes and links that cannot be placed (yet) in a section of the main page | ||
+ | |||
+ | ==== Plotting arcs (segments of ellipses) ==== | ||
+ | |||
+ | * [[https://matplotlib.org/stable/api/_as_gen/matplotlib.patches.Arc.html|Offical patches.Arc documentation]] | ||
+ | * A nice [[https://stackoverflow.com/questions/54849976/can-someone-explain-the-different-parameters-in-matplotlib-patches-arc|ellipses and arcs tutorial]] on stackoverflow | ||
+ | |||
+ | ==== Using hatches with contourf ==== | ||
+ | * [[https://matplotlib.org/stable/gallery/shapes_and_collections/hatch_style_reference.html|Hatch style reference]] | ||
+ | * [[https://matplotlib.org/stable/gallery/shapes_and_collections/hatch_demo.html|Hatch demo]] | ||
+ | * [[https://matplotlib.org/stable/gallery/images_contours_and_fields/contourf_hatching.html|Contourf hatching]] | ||
+ | * //Collections// trick for [[https://fantashit.com/hatching-color-in-contourf-function/|changing the colors of hatches]] | ||
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