other:uvcdat:cdat_conda:cdat_2_12
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other:uvcdat:cdat_conda:cdat_2_12 [2017/09/07 14:17] jypeter More changes |
other:uvcdat:cdat_conda:cdat_2_12 [2017/09/19 14:17] (current) jypeter What was changed here? Maybe the part about downgrading numpy? |
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| Notes about [[https://wiki.lsce.ipsl.fr/pmip3/doku.php/other:python:starting#conda-based_versions_of_uv-cdat|actually using the cdatm16 conda-based python]] | Notes about [[https://wiki.lsce.ipsl.fr/pmip3/doku.php/other:python:starting#conda-based_versions_of_uv-cdat|actually using the cdatm16 conda-based python]] | ||
| </WRAP> | </WRAP> | ||
| + | |||
| + | ==== Cloning ==== | ||
| <code>bash-4.1$ conda create -n cdatm16 --clone uvcdat-2.12 | <code>bash-4.1$ conda create -n cdatm16 --clone uvcdat-2.12 | ||
| - | Source: /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.10 | + | Source: /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.12 |
| - | Destination: /home/share/unix_files/cdat/miniconda2/envs/cdatm15 | + | Destination: /home/share/unix_files/cdat/miniconda2/envs/cdatm16 |
| [...] | [...] | ||
| - | |||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | ||
| - | 15G /home/share/unix_files/cdat/miniconda2 | ||
| bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | ||
| Line 87: | Line 86: | ||
| </code> | </code> | ||
| + | ==== Checking the permissions ==== | ||
| + | |||
| + | The files of some packages may have been installed with incorrect access rights, and //may not be readable by everybody// (e.g. [[https://github.com/PCMDI/pcmdi_metrics/issues/496|pcmdi_metrics/issues/496]] or [[https://github.com/UV-CDAT/cdp/issues/21|cdp/issues/21]]). We have to check and correct this by hand: | ||
| + | |||
| + | <code>(cdatm16) bash-4.1$ find uvcdat-2.12 \! -perm /g+r,o+r -ls | ||
| + | 24774102 4 -rw------- 3 jypeter lsce 670 Apr 4 20:35 uvcdat-2.12/lib/python2.7/site-packages/cdp/cdp_output.py | ||
| + | 24774113 4 -rw------- 3 jypeter lsce 2436 Apr 4 20:35 uvcdat-2.12/lib/python2.7/site-packages/cdp/cdp_parameter.pyc | ||
| + | 24774111 4 -rw------- 3 jypeter lsce 1821 Apr 4 20:35 uvcdat-2.12/lib/python2.7/site-packages/cdp/cdp_parser.py | ||
| + | [...] | ||
| + | 24774098 4 -rw------- 3 jypeter lsce 234 Apr 4 20:35 uvcdat-2.12/lib/python2.7/site-packages/cdp-1.0.3-py2.7.egg-info/PKG-INFO | ||
| + | 24774089 4 -rw------- 3 jypeter lsce 1 Apr 4 20:35 uvcdat-2.12/lib/python2.7/site-packages/cdp-1.0.3-py2.7.egg-info/not-zip-safe | ||
| + | |||
| + | (cdatm16) bash-4.1$ chmod -R a+r cdatm16/lib/python2.7/site-packages/cdp* chmod -R a+r uvcdat-2.12/lib/python2.7/site-packages/cdp*</code> | ||
| ===== Getting ready for a moving default CDAT ===== | ===== Getting ready for a moving default CDAT ===== | ||
| Line 108: | Line 120: | ||
| 174M /home/share/unix_files/cdat/miniconda2/envs/cdatm16/share/uvcdat/sample_data | 174M /home/share/unix_files/cdat/miniconda2/envs/cdatm16/share/uvcdat/sample_data | ||
| </code> | </code> | ||
| + | |||
| + | ==== Downgrading numpy ==== | ||
| + | |||
| + | |||
| + | <code>bash-4.1$ conda install -n cdatm16 -c conda-forge -c pcmdi -c uvcdat numpy=1.12 | ||
| + | Fetching package metadata ............... | ||
| + | Solving package specifications: . | ||
| + | |||
| + | Package plan for installation in environment /home/share/unix_files/cdat/miniconda2/envs/cdatm16: | ||
| + | |||
| + | The following NEW packages will be INSTALLED: | ||
| + | |||
| + | blas: 1.1-openblas conda-forge | ||
| + | openblas: 0.2.19-2 conda-forge | ||
| + | |||
| + | The following packages will be UPDATED: | ||
| + | |||
| + | binaryio: 2.12-np113py27h8073811_0 uvcdat --> 2.12-np112py27h5813a3b_0 uvcdat | ||
| + | cdms2: 2.12-np113py27_0 conda-forge --> 2.12-np112py27_0 conda-forge | ||
| + | cdtime: 2.12-np113py27_2 conda-forge --> 2.12-np112py27_2 conda-forge | ||
| + | cssgrid: 2.12-np113py27h3898552_0 uvcdat --> 2.12-np112py27hf1c8260_0 uvcdat | ||
| + | dsgrid: 2.12-np113py27h9d524be_0 uvcdat --> 2.12-np112py27h822527b_0 uvcdat | ||
| + | genutil: 2.12-np113py27_0 conda-forge --> 2.12-np112py27_0 conda-forge | ||
| + | lmoments: 2.12-np113py27h5574120_0 uvcdat --> 2.12-np112py27h665d648_0 uvcdat | ||
| + | matplotlib: 1.5.3-np113py27_8 conda-forge --> 2.0.0-np112py27_2 conda-forge | ||
| + | natgrid: 2.12-np113py27h481ab8b_0 uvcdat --> 2.12-np112py27h569c149_0 uvcdat | ||
| + | ort: 2.12-np113py27hd89025a_0 uvcdat --> 2.12-np112py27h964b06a_0 uvcdat | ||
| + | regridpack: 2.12-np113py27hf1cacc0_0 uvcdat --> 2.12-np112py27h6a169cd_0 uvcdat | ||
| + | scikit-learn: 0.19.0-np113py27_0 --> 0.19.0-py27_blas_openblas_201 conda-forge [blas_openblas] | ||
| + | scipy: 0.19.1-np113py27_0 --> 0.19.1-py27_blas_openblas_202 conda-forge [blas_openblas] | ||
| + | shgrid: 2.12-np113py27h2504d4d_0 uvcdat --> 2.12-np112py27h6f2dc27_0 uvcdat | ||
| + | trends: 2.12-np113py27hedb240a_0 uvcdat --> 2.12-np112py27he3ac0c2_0 uvcdat | ||
| + | uvcmetrics: 2.2.1-np113py27h151233a_0 uvcdat --> 2.2.1-np112py27_0 uvcdat | ||
| + | zonalmeans: 2.12-np113py27h96f9f80_0 uvcdat --> 2.12-np112py27hbce4e2c_0 uvcdat | ||
| + | |||
| + | The following packages will be SUPERCEDED by a higher-priority channel: | ||
| + | |||
| + | numpy: 1.13.1-py27_0 --> 1.12.1-py27_blas_openblas_200 conda-forge [blas_openblas] | ||
| + | |||
| + | Proceed ([y]/n)?</code> | ||
| + | |||
other/uvcdat/cdat_conda/cdat_2_12.1504793827.txt.gz · Last modified: 2017/09/07 14:17 by jypeter
