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other:uvcdat:cdat_conda:cdat_2_8_0 [2017/06/01 17:53] – Added a note about DOWNGRADING conda jypeter | other:uvcdat:cdat_conda:cdat_2_8_0 [2017/08/31 14:04] (current) – [Packages that have no dependency problems] Added a note about PMIP read permission problem jypeter |
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===== What's New? ===== | ===== What's New? ===== |
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* [[https://github.com/UV-CDAT/uvcdat/releases|Announcement]] and features summary | * [[https://github.com/UV-CDAT/uvcdat/releases/tag/v2.8|2.8 announcement]] and features summary ([[https://github.com/UV-CDAT/uvcdat/releases|all versions]]) |
* Full [[https://uv-cdat.llnl.gov/changelog.html#2.8|Change log]] | * Full [[https://uv-cdat.llnl.gov/changelog.html#2.8|Change log]] |
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* [[https://github.com/PCMDI/pcmdi_metrics|PCMDI metrics package]] (PMP) | * [[https://github.com/PCMDI/pcmdi_metrics|PCMDI metrics package]] (PMP) |
* ''conda install -n cdatm14 -c conda-forge -c pcmdi pcmdi_metrics'' | * ''conda install -n cdatm14 -c conda-forge -c pcmdi pcmdi_metrics'' |
| * Note: There was a [[https://github.com/PCMDI/pcmdi_metrics/issues/496|read permission problem on the files]] - <wrap em>Solved in 2.10</wrap> |
* [[https://xlsxwriter.readthedocs.io/|XlsxWriter]]: a Python module for creating Excel XLSX files | * [[https://xlsxwriter.readthedocs.io/|XlsxWriter]]: a Python module for creating Excel XLSX files |
* ''conda install -n cdatm14 xlsxwriter'' | * ''conda install -n cdatm14 xlsxwriter'' |
* Get version number with:\\ <code>$ drq -v | * Get version number with:\\ <code>$ drq -v |
dreqPy version 01.00.06 [Version 01.00.06]</code> | dreqPy version 01.00.06 [Version 01.00.06]</code> |
* [[https://cmor.llnl.gov/|CMOR]]: CMOR (//Climate Model Output Rewriter//) is used to produce CF-compliant netCDF files | * [[https://cmor.llnl.gov/|CMOR]]: CMOR (//Climate Model Output Rewriter//) is used to produce CF-compliant netCDF files |
* ''conda install -n cdatm14 -c conda-forge -c pcmdi -c uvcdat cmor'' | * ''conda install -n cdatm14 -c conda-forge -c pcmdi -c uvcdat cmor'' |
* Did not complete the installation yet, because it requested a downgrade of libnetcdf (see [[https://github.com/PCMDI/cmor/issues/138|github issue]]) | * Did not complete the installation yet, because it requested a downgrade of libnetcdf (see [[https://github.com/PCMDI/cmor/issues/138|github issue]]) |
* Installation issue was solved in ''cmor-3.2.3'' | * Installation issue was solved in ''cmor-3.2.3'' |
| * [[https://github.com/pierre-rouanet/dtw|dtw]]: DTW (Dynamic Time Warping) python module |
| * ''pip install dtw'' |
| * Requested by Sentia Goursaud |
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==== TODO ==== | ==== TODO ==== |
//Add here packages that would be useful but have some problems that prevent their installation// | //Add here packages that would be useful but have some problems that prevent their installation// |
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* [[https://earthsystemcog.org/projects/esmpy/|ESMPy]]: ESMF Python Regridding Interface | * [[https://earthsystemcog.org/projects/esmpy/|ESMPy]]: ESMF Python Regridding Interface - <wrap hi>Works in [[.:cdat_2_10|2.10]]!</wrap> |
* ''conda install -n cdatm14 -c conda-forge esmpy'' | * ''conda install -n cdatm14 -c conda-forge esmpy'' |
* Installation of esmpy ''7.0.0'' did not report errors, **but** esmpy seemed to have libraries based importation problems and has been removed | * Installation of esmpy ''7.0.0'' did not report errors, **but** esmpy seemed to have libraries based importation problems and has been removed |
* ''conda -n cdatm14 remove esmpy'' | * ''conda -n cdatm14 remove esmpy'' |
| * [[http://www.gdal.org/|GDAL]]: Geospatial Data Abstraction Library - <wrap hi>Works in [[.:cdat_2_10|2.10]]!</wrap> |
| * Cannot be installed due to too many dependency problems, and because it requires the downgrade of geos and rpy2 |
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==== Other packages ==== | ==== Other packages ==== |
* [[https://earthsystemcog.org/projects/wip/CMIP6DataRequest|dreqPy]]: CMIP6 Data Request Python API | * [[https://earthsystemcog.org/projects/wip/CMIP6DataRequest|dreqPy]]: CMIP6 Data Request Python API |
* [[https://cmor.llnl.gov/|CMOR]]: CMOR (//Climate Model Output Rewriter//) is used to produce CF-compliant netCDF files | * [[https://cmor.llnl.gov/|CMOR]]: CMOR (//Climate Model Output Rewriter//) is used to produce CF-compliant netCDF files |
| * [[https://github.com/pierre-rouanet/dtw|dtw]]: DTW (Dynamic Time Warping) python module |
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* [[http://toblerity.org/shapely/project.html|shapely]]: a Python wrapper for GEOS for algebraic manipulation of geometry (manipulation and analysis of geometric objects in the Cartesian plane) | * [[http://toblerity.org/shapely/project.html|shapely]]: a Python wrapper for GEOS for algebraic manipulation of geometry (manipulation and analysis of geometric objects in the Cartesian plane) |