other:uvcdat:cdat_conda:cdat_2_8_0
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other:uvcdat:cdat_conda:cdat_2_8_0 [2017/03/24 16:48] jypeter Added XlsxWriter and dreqPy |
other:uvcdat:cdat_conda:cdat_2_8_0 [2017/08/31 12:04] (current) jypeter [Packages that have no dependency problems] Added a note about PMIP read permission problem |
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| ===== What's New? ===== | ===== What's New? ===== | ||
| - | * [[https://github.com/UV-CDAT/uvcdat/releases|Announcement]] and features summary | + | * [[https://github.com/UV-CDAT/uvcdat/releases/tag/v2.8|2.8 announcement]] and features summary ([[https://github.com/UV-CDAT/uvcdat/releases|all versions]]) |
| * Full [[https://uv-cdat.llnl.gov/changelog.html#2.8|Change log]] | * Full [[https://uv-cdat.llnl.gov/changelog.html#2.8|Change log]] | ||
| Line 90: | Line 90: | ||
| 12K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/var | 12K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/var | ||
| 107M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/vistrails</code> | 107M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/vistrails</code> | ||
| + | |||
| + | ===== Downgrading conda ===== | ||
| + | |||
| + | Note: on June 1st 2017, we used the following step in order to **down**grade conda and be ready to install UV-CDAT 2.10 that required an older version of conda (strictly older than 4.3.13) than the one used for 2.8 | ||
| + | |||
| + | <code>bash-4.1$ conda install -n root "conda<4.3.13" | ||
| + | Fetching package metadata ......... | ||
| + | Solving package specifications: . | ||
| + | |||
| + | Package plan for installation in environment /home/share/unix_files/cdat/miniconda2: | ||
| + | |||
| + | The following packages will be DOWNGRADED due to dependency conflicts: | ||
| + | |||
| + | conda: 4.3.13-py27_0 --> 4.3.11-py27_0 | ||
| + | |||
| + | Proceed ([y]/n)? y | ||
| + | |||
| + | conda-4.3.11-p 100% |###############################################################| Time: 0:00:00 4.28 MB/s | ||
| + | |||
| + | bash-4.1$ conda info | ||
| + | Current conda install: | ||
| + | |||
| + | platform : linux-64 | ||
| + | conda version : 4.3.11 | ||
| + | conda is private : False | ||
| + | conda-env version : 4.3.11</code> | ||
| ===== Cloning uvcdat to add specific packages for LSCE ===== | ===== Cloning uvcdat to add specific packages for LSCE ===== | ||
| Line 95: | Line 121: | ||
| <WRAP center round tip 60%> | <WRAP center round tip 60%> | ||
| This section is about the creation of the **cdatm14** environment | This section is about the creation of the **cdatm14** environment | ||
| + | |||
| + | Notes about [[https://wiki.lsce.ipsl.fr/pmip3/doku.php/other:python:starting#conda-based_versions_of_uv-cdat|actually using the cdatm14 conda-based python]] | ||
| </WRAP> | </WRAP> | ||
| Line 163: | Line 191: | ||
| * [[https://github.com/PCMDI/pcmdi_metrics|PCMDI metrics package]] (PMP) | * [[https://github.com/PCMDI/pcmdi_metrics|PCMDI metrics package]] (PMP) | ||
| * ''conda install -n cdatm14 -c conda-forge -c pcmdi pcmdi_metrics'' | * ''conda install -n cdatm14 -c conda-forge -c pcmdi pcmdi_metrics'' | ||
| - | * [[https://earthsystemcog.org/projects/esmpy/|ESMPy]]: ESMF Python Regridding Interface | + | * Note: There was a [[https://github.com/PCMDI/pcmdi_metrics/issues/496|read permission problem on the files]] - <wrap em>Solved in 2.10</wrap> |
| - | * ''conda install -n cdatm14 -c conda-forge esmpy'' | + | |
| * [[https://xlsxwriter.readthedocs.io/|XlsxWriter]]: a Python module for creating Excel XLSX files | * [[https://xlsxwriter.readthedocs.io/|XlsxWriter]]: a Python module for creating Excel XLSX files | ||
| * ''conda install -n cdatm14 xlsxwriter'' | * ''conda install -n cdatm14 xlsxwriter'' | ||
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| * [[https://earthsystemcog.org/projects/wip/CMIP6DataRequest|dreqPy]]: CMIP6 Data Request Python API | * [[https://earthsystemcog.org/projects/wip/CMIP6DataRequest|dreqPy]]: CMIP6 Data Request Python API | ||
| * ''pip install dreqPy'' | * ''pip install dreqPy'' | ||
| + | * Update with: ''pip install %%--%%upgrade dreqPy'' | ||
| + | * Get version number with:\\ <code>$ drq -v | ||
| + | dreqPy version 01.00.06 [Version 01.00.06]</code> | ||
| + | * [[https://cmor.llnl.gov/|CMOR]]: CMOR (//Climate Model Output Rewriter//) is used to produce CF-compliant netCDF files | ||
| + | * ''conda install -n cdatm14 -c conda-forge -c pcmdi -c uvcdat cmor'' | ||
| + | * Did not complete the installation yet, because it requested a downgrade of libnetcdf (see [[https://github.com/PCMDI/cmor/issues/138|github issue]]) | ||
| + | * Installation issue was solved in ''cmor-3.2.3'' | ||
| + | * [[https://github.com/pierre-rouanet/dtw|dtw]]: DTW (Dynamic Time Warping) python module | ||
| + | * ''pip install dtw'' | ||
| + | * Requested by Sentia Goursaud | ||
| ==== TODO ==== | ==== TODO ==== | ||
| + | //Add here packages that would be useful but have some problems that prevent their installation// | ||
| - | * CMOR | + | * [[https://earthsystemcog.org/projects/esmpy/|ESMPy]]: ESMF Python Regridding Interface - <wrap hi>Works in [[.:cdat_2_10|2.10]]!</wrap> |
| - | * ''conda install -n cdatm14 -c conda-forge -c pcmdi -c uvcdat cmor'' | + | * ''conda install -n cdatm14 -c conda-forge esmpy'' |
| - | * Did not complete the installation yet, because it requested a downgrade of libnetcdf (see [[https://github.com/PCMDI/cmor/issues/138|github issue]]) | + | * Installation of esmpy ''7.0.0'' did not report errors, **but** esmpy seemed to have libraries based importation problems and has been removed |
| + | * ''conda -n cdatm14 remove esmpy'' | ||
| + | * [[http://www.gdal.org/|GDAL]]: Geospatial Data Abstraction Library - <wrap hi>Works in [[.:cdat_2_10|2.10]]!</wrap> | ||
| + | * Cannot be installed due to too many dependency problems, and because it requires the downgrade of geos and rpy2 | ||
| ==== Other packages ==== | ==== Other packages ==== | ||
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| * [[https://github.com/conda-forge/basemap-data-hires-feedstock|basemap-data-hires]]: high resolution data for ''basemap'' | * [[https://github.com/conda-forge/basemap-data-hires-feedstock|basemap-data-hires]]: high resolution data for ''basemap'' | ||
| * [[https://github.com/PCMDI/pcmdi_metrics|PCMDI metrics package]] (PMP): objectively compare results from climate models with observations using well-established statistical tests | * [[https://github.com/PCMDI/pcmdi_metrics|PCMDI metrics package]] (PMP): objectively compare results from climate models with observations using well-established statistical tests | ||
| - | * [[https://earthsystemcog.org/projects/esmpy/|ESMPy]]: ESMF Python Regridding Interface | ||
| * [[https://xlsxwriter.readthedocs.io/|XlsxWriter]]: a Python module for creating Excel XLSX files | * [[https://xlsxwriter.readthedocs.io/|XlsxWriter]]: a Python module for creating Excel XLSX files | ||
| * [[https://earthsystemcog.org/projects/wip/CMIP6DataRequest|dreqPy]]: CMIP6 Data Request Python API | * [[https://earthsystemcog.org/projects/wip/CMIP6DataRequest|dreqPy]]: CMIP6 Data Request Python API | ||
| + | * [[https://cmor.llnl.gov/|CMOR]]: CMOR (//Climate Model Output Rewriter//) is used to produce CF-compliant netCDF files | ||
| + | * [[https://github.com/pierre-rouanet/dtw|dtw]]: DTW (Dynamic Time Warping) python module | ||
| * [[http://toblerity.org/shapely/project.html|shapely]]: a Python wrapper for GEOS for algebraic manipulation of geometry (manipulation and analysis of geometric objects in the Cartesian plane) | * [[http://toblerity.org/shapely/project.html|shapely]]: a Python wrapper for GEOS for algebraic manipulation of geometry (manipulation and analysis of geometric objects in the Cartesian plane) | ||
other/uvcdat/cdat_conda/cdat_2_8_0.1490374135.txt.gz · Last modified: 2017/03/24 16:48 by jypeter
