other:uvcdat:cdat_conda:cdat_8_0_py2
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other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/04 16:55] jypeter |
other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/04 17:23] jypeter |
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| * Update with: ''pip install %%--%%upgrade dreqPy'' | * Update with: ''pip install %%--%%upgrade dreqPy'' | ||
| * Get version number with:\\ <code>$ drq -v | * Get version number with:\\ <code>$ drq -v | ||
| - | dreqPy version 01.00.06 [Version 01.00.06]</code> | + | dreqPy version 01.00.29 [Version 01.00.29]</code> |
| The following packages have no dependency problems and were installed (or updated) //later// | The following packages have no dependency problems and were installed (or updated) //later// | ||
| - | * [[http://scitools.org.uk/iris/index.html|iris]]: A Python library for Meteorology and Climatology | + | |
| - | * ''conda install -n cdatm15 -c conda-forge iris'' | + | * [[http://www.ifremer.fr/vacumm/|vacumm]]: Validation, Analysis, Comparison - Utilities written in Python to validate and analyze Multi-Model outputs, and compare them to observations |
| + | * ''conda install -n cdatm17_py2 -c conda-forge -c vacumm vacumm'' | ||
| * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | ||
| - | * ''conda install -n cdatm15 -c stefraynaud -c conda-forge spanlib'' | + | * ''conda install -n cdatm17_py2 -c stefraynaud -c conda-forge spanlib'' |
| * Test: ''python -c 'from spanlib.analyzer import Analyzer' '' | * Test: ''python -c 'from spanlib.analyzer import Analyzer' '' | ||
| + | |||
| + | ==== TODO ==== | ||
| + | |||
| + | //Add here packages that would be useful and have not been installed yet, or have some problems that prevent their installation// | ||
| + | |||
| + | * [[http://scitools.org.uk/iris/index.html|iris]]: A Python library for Meteorology and Climatology | ||
| + | * ''conda install -n cdatxxx -c conda-forge iris'' | ||
| * [[http://wrf-python.readthedocs.io/en/latest/|wrf-python]]: A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model | * [[http://wrf-python.readthedocs.io/en/latest/|wrf-python]]: A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model | ||
| * ''conda install -n cdatm15 -c conda-forge wrf-python'' | * ''conda install -n cdatm15 -c conda-forge wrf-python'' | ||
| - | * [[https://glances.readthedocs.io/en/stable/index.html|glances]]: a cross-platform monitoring tool (similar to ''top'') | + | * [[https://glances.readthedocs.io/en/stable/index.html|glances]]: a cross-platform monitoring tool (similar to ''top'') |
| * ''conda install -n cdatm15 -c conda-forge glances'' | * ''conda install -n cdatm15 -c conda-forge glances'' | ||
| * [[https://github.com/nicolargo/glances|glances@github]] | * [[https://github.com/nicolargo/glances|glances@github]] | ||
| - | |||
| - | ==== TODO ==== | ||
| - | |||
| - | //Add here packages that would be useful but have some problems that prevent their installation// | ||
| - | |||
| - | * [[http://www.ifremer.fr/vacumm/|vacumm]]: Validation, Analysis, Comparison - Utilities written in Python to validate and analyze Multi-Model outputs, and compare them to observations | ||
| - | * As of August 08 2017, installing vacumm in 2.10 requires downgrading to 2.10 (see [[https://github.com/VACUMM/vacumm/issues/9|github issue]])! | ||
| - | * <wrap hi>Problem solved</wrap> with **vacumm 3.4.1-1** on August 31st! Installation was OK with\\ ''conda install -n cdatm15 -c conda-forge -c vacumm vacumm'' | ||
| ==== Other packages ==== | ==== Other packages ==== | ||
| Line 420: | Line 420: | ||
| We check if some of the installed files are missing read access for the //group// or //other//, and we manually change the permissions | We check if some of the installed files are missing read access for the //group// or //other//, and we manually change the permissions | ||
| - | <code>(cdatm15) bash-4.2$ find cdatm15 \! -perm /g+r,o+r -ls | + | <code> >find /home/share/unix_files/cdat/miniconda3/envs \! -perm /g+r,o+r -ls |
| - | [...] | + | # Everything OK!</code> |
| - | (cdatm15) bash-4.2$ chmod -R a+r cdatm15/lib/python2.7/site-packages/cdp* | + | |
| - | (cdatm15) bash-4.2$ find cdatm15 \! -perm /g+r,o+r -ls</code> | + | |
| Line 449: | Line 447: | ||
| * [[https://rpy2.readthedocs.io/en/version_2.8.x/|rpy2]]: providing simple and robust access to R from within Python | * [[https://rpy2.readthedocs.io/en/version_2.8.x/|rpy2]]: providing simple and robust access to R from within Python | ||
| * [[http://matplotlib.org/cmocean/|cmocean]]: beautiful colormaps for oceanography | * [[http://matplotlib.org/cmocean/|cmocean]]: beautiful colormaps for oceanography | ||
| - | * [[http://scitools.org.uk/iris/index.html|iris]]: A Python library for Meteorology and Climatology | ||
| * [[http://www.gdal.org/|OSGeo/GDAL]]: Geospatial Data Abstraction Library. GDAL is a translator library for raster and vector geospatial data formats | * [[http://www.gdal.org/|OSGeo/GDAL]]: Geospatial Data Abstraction Library. GDAL is a translator library for raster and vector geospatial data formats | ||
| * [[https://pcjericks.github.io/py-gdalogr-cookbook/|Python GDAL/OGR Cookbook]] | * [[https://pcjericks.github.io/py-gdalogr-cookbook/|Python GDAL/OGR Cookbook]] | ||
| * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | ||
| - | * [[http://wrf-python.readthedocs.io/en/latest/|wrf-python]]: A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model | ||
| - | * [[https://glances.readthedocs.io/en/stable/index.html|glances]]: a cross-platform monitoring tool (similar to ''top'') | ||
| * [[https://ajdawson.github.io/windspharm/latest/|windspharm]]: spherical harmonic wind analysis in Python | * [[https://ajdawson.github.io/windspharm/latest/|windspharm]]: spherical harmonic wind analysis in Python | ||
| Line 466: | Line 461: | ||
| ^ Environment\\ name ^ Server ^ ''conda list'' ^ | ^ Environment\\ name ^ Server ^ ''conda list'' ^ | ||
| - | | uvcdat-2.10 | LSCE | {{ |package list}} | | + | | cdat-8.0_py2 | LSCE\\ ciclad | | |
| - | | cdatm15 | LSCE | {{ |package list}} | | + | | cdatm17_py2 | LSCE\\ ciclad | | |
| + | | cdat-nightly_py2 | LSCE\\ ciclad | | | ||
| + | | cdatm-nightly_py2 | LSCE\\ ciclad | | | ||
| /* standard page footer */ | /* standard page footer */ | ||
other/uvcdat/cdat_conda/cdat_8_0_py2.txt · Last modified: 2021/02/27 13:55 by jypeter
