other:uvcdat:cdat_conda:cdat_8_0_py2
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/04 17:23] jypeter |
other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/07 10:04] jypeter [Installing CLIMAF] |
||
|---|---|---|---|
| Line 414: | Line 414: | ||
| * Update with: ''pip install %%--%%upgrade dreqPy'' | * Update with: ''pip install %%--%%upgrade dreqPy'' | ||
| * Get version number with: ''drq -v'' | * Get version number with: ''drq -v'' | ||
| + | |||
| + | ==== Installing CLIMAF ==== | ||
| + | |||
| + | The [[https://climaf.readthedocs.io/|CLIMAF]] installation is a special case, because we may want to use it with the Python installed for CDAT, but it is not installed using conda | ||
| + | |||
| + | We follow the steps for the [[https://climaf.readthedocs.io/en/latest/installing.html#installing-climaf-if-you-are-not-at-cnrm-on-ciclad-or-climserv|installation of a non-standard server]] | ||
| + | |||
| + | * Go to the appropriate installation directory (we choose the directory where we have also installed miniconda3): | ||
| + | * LSCE: ''cd /home/share/unix_files/cdat'' | ||
| + | * ciclad: ''/data/jypmce/cdat/'' | ||
| + | * ''git clone https://github.com/senesis/climaf climaf'' | ||
| + | * Add CLIMAF to the PYTHONPATH environment variable | ||
| + | * LSCE & tcsh: ''setenv PYTHONPATH ${PYTHONPATH}:/home/share/unix_files/cdat/climaf'' | ||
| + | * LSCE & bash: ''export PYTHONPATH=${PYTHONPATH}:/home/share/unix_files/cdat/climaf'' | ||
| + | * ciclad: same as above, using ''/data/jypmce/cdat/climaf'' | ||
| + | * Test the installation | ||
| + | * make sure the [[https://climaf.readthedocs.io/en/latest/requirements.html#requirements|Requirements]] are available: | ||
| + | * LSCE: ''module load netcdf/4 nco cdo ncl ncview'' | ||
| + | * ciclad: ''module load netcdf4 nco cdo ncl/6.3.0'' | ||
| + | * optional: start an X server | ||
| + | * <code>cd climaf/testing | ||
| + | ./test_install.sh</code> | ||
| + | * Once the tests are OK, add the required //module load// and environment variables definitions to the ''.basrc'' and ''.cshrc'' files. <wrap hi>Note: maybe these lines should go to the ''.profile'' and ''.login'' files...(check [[https://www.gnu.org/software/bash/manual/html_node/Bash-Startup-Files.html|Bash Startup Files]])</wrap> | ||
| + | * LSCE: add to your .cshrc | ||
| + | * <code># Prerequisites for using CLIMAF | ||
| + | module load netcdf/4 nco cdo ncl ncview | ||
| + | |||
| + | # CLIMAF environment variables | ||
| + | setenv CLIMAF /home/share/unix_files/cdat/climaf | ||
| + | setenv PYTHONPATH "${PYTHONPATH}:${CLIMAF}" | ||
| + | #setenv PYTHONPATH $CLIMAF | ||
| + | setenv PATH "${PATH}:${CLIMAF}/bin" | ||
| + | setenv CLIMAF_CACHE "/home/scratch01/${USER}/climaf_cache" | ||
| + | setenv TMPDIR $CLIMAF_CACHE | ||
| + | setenv CLIMAF_LOG_DIR $CLIMAF_CACHE | ||
| + | |||
| + | #conda activate cdatm-nightly_py2</code> | ||
| + | * ciclad: add to your .bashrc | ||
| + | * <code># Prerequisites for using CLIMAF when not using the | ||
| + | # default 'module load climaf' | ||
| + | module load netcdf4 nco cdo ncl/6.3.0 | ||
| + | |||
| + | # CLIMAF environment variables | ||
| + | export CLIMAF=/data/jypmce/cdat/climaf | ||
| + | #export PYTHONPATH=$PYTHONPATH:$CLIMAF | ||
| + | export PYTHONPATH=$CLIMAF | ||
| + | export PATH=$PATH:$CLIMAF/bin | ||
| + | export CLIMAF_CACHE=/data/jypmce/climaf_cache | ||
| + | export TMPDIR=$CLIMAF_CACHE | ||
| + | export CLIMAF_LOG_DIR=$CLIMAF_CACHE | ||
| + | |||
| + | #conda activate cdatm-nightly_py2 | ||
| + | </code> | ||
| + | * Open a new shell and <wrap em>run the tests again</wrap>. If there is an error that was not there, check what you have added to the shell init files | ||
| + | * [[other:uvcdat:cdat_conda:climaf_test|Test CLIMAF on ciclad]] | ||
| ==== Cleaning up things ==== | ==== Cleaning up things ==== | ||
other/uvcdat/cdat_conda/cdat_8_0_py2.txt · Last modified: 2021/02/27 13:55 by jypeter
