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--- other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/04 18:23] – jypeter
+++ other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/13 14:54] – jypeter
@@ Line 382: / Line 382: @@
     * ''conda install -n cdatm17_py2 -c stefraynaud -c conda-forge spanlib''
     * Test: ''python -c 'from spanlib.analyzer import Analyzer' ''
+  * [[https://climaf.readthedocs.io/en/latest/|CliMAF]]: a Climate Model Assessment Framework
+    * [[other:uvcdat:cdat_conda:climaf_install|Installation notes]]
 ==== TODO ====
@@ Line 391: / Line 394: @@
   * [[http://wrf-python.readthedocs.io/en/latest/|wrf-python]]: A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model
-    * ''conda install -n cdatm15 -c conda-forge wrf-python''
+    * ''conda install -n cdatxxx -c conda-forge wrf-python''
   * [[https://glances.readthedocs.io/en/stable/index.html|glances]]: a cross-platform monitoring tool (similar to ''top'')
-    * ''conda install -n cdatm15 -c conda-forge glances''
+    * ''conda install -n cdatxxx -c conda-forge glances''
     * [[https://github.com/nicolargo/glances|glances@github]]
@@ Line 408: / Line 411: @@
   * [[https://cmor.llnl.gov/|CMOR]]
-    * Update with: ''conda update -n cdatm15 -c conda-forge -c pcmdi -c uvcdat cmor''
+    * Update with: ''conda update -n cdatxxx -c conda-forge -c pcmdi -c uvcdat cmor''
       * Get version number with: ''python -c 'from cmor import *; print CMOR_VERSION_MAJOR, CMOR_VERSION_MINOR, CMOR_VERSION_PATCH' ''
@@ Line 414: / Line 417: @@
     * Update with: ''pip install %%--%%upgrade dreqPy''
       * Get version number with: ''drq -v''
+==== Installing CLIMAF ====
+The [[https://climaf.readthedocs.io/|CLIMAF]] installation is a special case, because we may want to use it with the Python installed for CDAT, but it is not installed using conda
+We follow the steps for the [[https://climaf.readthedocs.io/en/latest/installing.html#installing-climaf-if-you-are-not-at-cnrm-on-ciclad-or-climserv|installation of a non-standard server]]
+  * Go to the appropriate installation directory (we choose the directory where we have also installed miniconda3):
+    * LSCE: ''cd /home/share/unix_files/cdat''
+    * ciclad: ''/data/jypmce/cdat/''
+  * ''git clone https://github.com/senesis/climaf climaf''
+  * Add CLIMAF to the PYTHONPATH environment variable
+    * LSCE & tcsh: ''setenv PYTHONPATH ${PYTHONPATH}:/home/share/unix_files/cdat/climaf''
+    * LSCE & bash: ''export PYTHONPATH=${PYTHONPATH}:/home/share/unix_files/cdat/climaf''
+    * ciclad: same as above, using ''/data/jypmce/cdat/climaf''
+  * Test the installation
+    * make sure the [[https://climaf.readthedocs.io/en/latest/requirements.html#requirements|Requirements]] are available:
+      * LSCE: ''module load netcdf/4 nco cdo ncl ncview''
+      * ciclad: ''module load netcdf4 nco cdo ncl/6.3.0''
+      * optional: start an X server
+      * <code>cd climaf/testing
+./test_install.sh</code>
+  * Once the tests are OK, add the required //module load// and environment variables definitions to the ''.basrc'' and ''.cshrc'' files. <wrap hi>Note: maybe these lines should go to the ''.profile'' and ''.login'' files...(check [[https://www.gnu.org/software/bash/manual/html_node/Bash-Startup-Files.html|Bash Startup Files]])</wrap>
+    * LSCE: add to your .cshrc
+      * <code># Prerequisites for using CLIMAF
+module load netcdf/4 nco cdo ncl ncview
+# CLIMAF environment variables
+setenv CLIMAF /home/share/unix_files/cdat/climaf
+setenv PYTHONPATH "${PYTHONPATH}:${CLIMAF}"
+#setenv PYTHONPATH $CLIMAF
+setenv PATH "${PATH}:${CLIMAF}/bin"
+setenv CLIMAF_CACHE "/home/scratch01/${USER}/climaf_cache"
+setenv TMPDIR $CLIMAF_CACHE
+setenv CLIMAF_LOG_DIR $CLIMAF_CACHE
+#conda activate cdatm-nightly_py2</code>
+    * ciclad: add to your .bashrc
+      * <code># Prerequisites for using CLIMAF when not using the
+# default 'module load climaf'
+module load netcdf4 nco cdo ncl/6.3.0
+# CLIMAF environment variables
+export CLIMAF=/data/jypmce/cdat/climaf
+#export PYTHONPATH=$PYTHONPATH:$CLIMAF
+export PYTHONPATH=$CLIMAF
+export PATH=$PATH:$CLIMAF/bin
+export CLIMAF_CACHE=/data/jypmce/climaf_cache
+export TMPDIR=$CLIMAF_CACHE
+export CLIMAF_LOG_DIR=$CLIMAF_CACHE
+#conda activate cdatm-nightly_py2
+</code>
+  * Open a new shell and <wrap em>run the tests again</wrap>. If there is an error that was not there, check what you have added to the shell init files
+  * [[other:uvcdat:cdat_conda:climaf_test|Test CLIMAF on ciclad]]
 ==== Cleaning up things ====
@@ Line 461: / Line 519: @@
 ^  Environment\\ name  ^  Server  ^  ''conda list''  ^
-| cdat-8.0_py2 |  LSCE\\ ciclad  | |
+| cdat-8.0_py2 |  LSCE  | |
-| cdatm17_py2 |  LSCE\\ ciclad  | |
+| cdatm17_py2 |  LSCE | |
 | cdat-nightly_py2 |  LSCE\\ ciclad  | |
 | cdatm-nightly_py2 |  LSCE\\ ciclad  | |