other:uvcdat:cdat_conda:cdat_8_0_py2
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other:uvcdat:cdat_conda:cdat_8_0_py2 [2019/03/05 17:04] jypeter Added the CLIMAF section |
other:uvcdat:cdat_conda:cdat_8_0_py2 [2021/02/26 18:31] jypeter Improved... |
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| ==== Installing Miniconda3 ==== | ==== Installing Miniconda3 ==== | ||
| - | We have installed a new version of Miniconda3 (steps below adapted from the [[other:uvcdat:conda_notes#installing_miniconda|installing miniconda]] instructions) | + | * You don't need to be (and **you should not be**) //root// when you install Miniconda3. You just need enough disk space where you have write access |
| + | * If you are installing Miniconda3 in a Linux environment on a [[other:win10wsl|Windows 10 computer using Windows Subsystem for Linux (WSL)]], pay special attention to the instructions on the **WSL** lines | ||
| - | * Get the [[https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh|Python 3.7 Linux 64-bit (bash installer)]] (unless there is a [[https://conda.io/miniconda.html|more recent version?]]) | + | The steps below are adapted from the older (but with lots of extra and possibly useful details) [[other:uvcdat:conda_notes#installing_miniconda|installing miniconda]] instructions |
| - | * Find some temporary space on Linux or Windows | + | |
| - | * Linux:''cd /home/scratch01/jypeter'' | + | * Get the [[https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh|Python 3.8 Linux 64-bit (bash installer)]] (unless there is a [[https://conda.io/miniconda.html|more recent version?]]) |
| - | * WSL: ''cd /mnt/h/Scratch/jypeter/'' (assuming that there is a ''H:\Scratch\jypeter'' directory) | + | * Find some temporary space on Linux (or Windows, if you are using WSL) |
| - | * ''wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh'' (67 Mo, 15 Feb 2019) | + | * e.g. Linux at LSCE:\\ ''cd /home/scratch01/<your_login>'' |
| + | * e.g. WSL, assuming that there is a ''C:\Scratch\<your_login>'' directory:\\ ''cd /mnt/c/Scratch/<your_login>'' | ||
| + | * Use ''wget'' to download the installer:\\ ''wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'' (90 Mb, 26 Feb 2021) | ||
| * Execute the installer | * Execute the installer | ||
| * ''bash Miniconda3-latest-Linux-x86_64.sh'' | * ''bash Miniconda3-latest-Linux-x86_64.sh'' | ||
| * Accept the license | * Accept the license | ||
| - | * Specify an explicit installation path **outside of the home directory**, with enough disk space (more than 3G if you are going to install UV-CDAT and some extra packages), preferably on a disk that is not backed up: | + | * Specify an explicit installation path **outside of your //home// directory**, with enough disk space (more than 3 Gb if you are going to install CDAT and some extra packages), preferably on a disk that is not backed up: |
| - | * Linux LSCE: ''/home/share/unix_files/cdat/miniconda3'' | + | * Installations by //JYP//: |
| - | * Linux ciclad: ''/data/jypmce/cdat/miniconda3'' | + | * Linux at LSCE: ''/home/share/unix_files/cdat/miniconda3'', or another subdirectory of ''/home/share/unix_files/cdat/'' |
| + | * Linux on ciclad: ''/data/jypmce/cdat/miniconda3'', or another subdirectory of ''/data/jypmce/cdat/'' | ||
| * WSL: installing to a directory that is not in ''/home/'' <wrap hi>does not work</wrap> (e.g. ''/mnt/h/CDAT/miniconda3'',assuming there is a ''H:\CDAT\'' directory, does not work)\\ Need to accept the installation in the default location: ''/home/jypeter/miniconda3'' | * WSL: installing to a directory that is not in ''/home/'' <wrap hi>does not work</wrap> (e.g. ''/mnt/h/CDAT/miniconda3'',assuming there is a ''H:\CDAT\'' directory, does not work)\\ Need to accept the installation in the default location: ''/home/jypeter/miniconda3'' | ||
| * Resulting ''miniconda3'' directory size is 302M\\ <code> >du -sh miniconda3 | * Resulting ''miniconda3'' directory size is 302M\\ <code> >du -sh miniconda3 | ||
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| * ''conda install -n cdatm17_py2 -c stefraynaud -c conda-forge spanlib'' | * ''conda install -n cdatm17_py2 -c stefraynaud -c conda-forge spanlib'' | ||
| * Test: ''python -c 'from spanlib.analyzer import Analyzer' '' | * Test: ''python -c 'from spanlib.analyzer import Analyzer' '' | ||
| + | | ||
| + | * [[https://climaf.readthedocs.io/en/latest/|CliMAF]]: a Climate Model Assessment Framework | ||
| + | * [[other:uvcdat:cdat_conda:climaf_install|Installation notes]] | ||
| ==== TODO ==== | ==== TODO ==== | ||
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| * [[http://wrf-python.readthedocs.io/en/latest/|wrf-python]]: A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model | * [[http://wrf-python.readthedocs.io/en/latest/|wrf-python]]: A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model | ||
| - | * ''conda install -n cdatm15 -c conda-forge wrf-python'' | + | * ''conda install -n cdatxxx -c conda-forge wrf-python'' |
| * [[https://glances.readthedocs.io/en/stable/index.html|glances]]: a cross-platform monitoring tool (similar to ''top'') | * [[https://glances.readthedocs.io/en/stable/index.html|glances]]: a cross-platform monitoring tool (similar to ''top'') | ||
| - | * ''conda install -n cdatm15 -c conda-forge glances'' | + | * ''conda install -n cdatxxx -c conda-forge glances'' |
| * [[https://github.com/nicolargo/glances|glances@github]] | * [[https://github.com/nicolargo/glances|glances@github]] | ||
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| * [[https://cmor.llnl.gov/|CMOR]] | * [[https://cmor.llnl.gov/|CMOR]] | ||
| - | * Update with: ''conda update -n cdatm15 -c conda-forge -c pcmdi -c uvcdat cmor'' | + | * Update with: ''conda update -n cdatxxx -c conda-forge -c pcmdi -c uvcdat cmor'' |
| * Get version number with: ''python -c 'from cmor import *; print CMOR_VERSION_MAJOR, CMOR_VERSION_MINOR, CMOR_VERSION_PATCH' '' | * Get version number with: ''python -c 'from cmor import *; print CMOR_VERSION_MAJOR, CMOR_VERSION_MINOR, CMOR_VERSION_PATCH' '' | ||
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| * <code>cd climaf/testing | * <code>cd climaf/testing | ||
| ./test_install.sh</code> | ./test_install.sh</code> | ||
| - | * Once the tests are OK, add the required //module load// and environment variables definitions to the ''.basrc'' and ''.cshrc'' files. <wrap hi>Note: maybe these lines should go to the ''.profile'' and ''.login'' files...</wrap> | + | * Once the tests are OK, add the required //module load// and environment variables definitions to the ''.basrc'' and ''.cshrc'' files. <wrap hi>Note: maybe these lines should go to the ''.profile'' and ''.login'' files...(check [[https://www.gnu.org/software/bash/manual/html_node/Bash-Startup-Files.html|Bash Startup Files]])</wrap> |
| * LSCE: add to your .cshrc | * LSCE: add to your .cshrc | ||
| * <code># Prerequisites for using CLIMAF | * <code># Prerequisites for using CLIMAF | ||
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| </code> | </code> | ||
| * Open a new shell and <wrap em>run the tests again</wrap>. If there is an error that was not there, check what you have added to the shell init files | * Open a new shell and <wrap em>run the tests again</wrap>. If there is an error that was not there, check what you have added to the shell init files | ||
| + | * [[other:uvcdat:cdat_conda:climaf_test|Test CLIMAF on ciclad]] | ||
| ==== Cleaning up things ==== | ==== Cleaning up things ==== | ||
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| ^ Environment\\ name ^ Server ^ ''conda list'' ^ | ^ Environment\\ name ^ Server ^ ''conda list'' ^ | ||
| - | | cdat-8.0_py2 | LSCE\\ ciclad | | | + | | cdat-8.0_py2 | LSCE | | |
| - | | cdatm17_py2 | LSCE\\ ciclad | | | + | | cdatm17_py2 | LSCE | | |
| | cdat-nightly_py2 | LSCE\\ ciclad | | | | cdat-nightly_py2 | LSCE\\ ciclad | | | ||
| | cdatm-nightly_py2 | LSCE\\ ciclad | | | | cdatm-nightly_py2 | LSCE\\ ciclad | | | ||
other/uvcdat/cdat_conda/cdat_8_0_py2.txt · Last modified: 2021/02/27 13:55 by jypeter
