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other:uvcdat:cdat_conda:cdat_8_1 [2019/10/04 13:50]
jypeter Added palettable
other:uvcdat:cdat_conda:cdat_8_1 [2020/01/28 11:09] (current)
jypeter [Packages that have no dependency problems] Added ferret_datasets
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 ===== Using JYP version ===== ===== Using JYP version =====
  
-If you mostly want to use the CDAT 8.1 installed by JYP, just use the following steps and skip the next sections: +If you mostly want to use the CDAT 8.1 installed by JYP, just use the following steps and then read the //What should I do now?// section below 
-  * Initialize conda:+ 
 +  * Initialize ​//conda// with:
  
 ^  Server ​ ^  tcsh  ^  bash  ^ ^  Server ​ ^  tcsh  ^  bash  ^
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 |  ciclad ​ | ''​source ~jypmce/​.conda3_jyp.csh''​ | ''​source ~jypmce/​.conda3_jyp.sh''​ | |  ciclad ​ | ''​source ~jypmce/​.conda3_jyp.csh''​ | ''​source ~jypmce/​.conda3_jyp.sh''​ |
  
-  * Activate ​the default environment: ''​conda activate cdatm_py2''​ +  * Choose one of the [[#​environments_summary|installed environments]] and activate it with: ''​conda activate env_name''​ 
-    * Check the [[#environments_summary|Available environments]] for more options +    * python 2.7.x: ''​conda activate cdatm_py2''​ 
-===== What's New? =====+    * python 3.x: ''​conda activate cdatm_py3''​ (not available on ciclad, but could be installed) 
 + 
 +  * Type ''​which python''​ (or the ''​wp''​ alias) and make sure you get something like\\ ''​[...]/​miniconda3/​envs/​env_name/​bin/​python''​ 
 + 
 + 
 +===== What should I do now? ===== 
 + 
 +==== You just want to use the installed version ==== 
 + 
 +You are ready if you have typed the ''​conda activate''​ command specified in the previous section! 
 +  * You may want to add the ''​source''​ line to your shell configuration file so that you don't have to remember it and type it each time you open a new terminal 
 +    * Note: it's better to type the ''​activate''​ command in a terminal only when you want to use this specific version of python, rather than having the ''​activate''​ in your shell configuration file. This may have some side effects in some cases 
 +  * Have a look at the [[other:​uvcdat:​cdat_conda:​cdat_8_1#extra_packages_list|Extra package list]] at the bottom of this page to see what is available in this distribution 
 +  * If you have not done it yet, read (or at least have a look at the list of sections):​ 
 +    * [[other:​python:​starting|Working with Python]] 
 +    * [[other:​python:​jyp_steps|JYP'​s recommended steps for learning python]] 
 + 
 +==== You want to replicate this installation on your own server or desktop/​laptop ==== 
 + 
 +===== What's New in CDAT 8.1? =====
  
   * [[https://​github.com/​cdat/​cdat/​releases/​tag/​v8.1|8.1 announcement]] and features summary ([[https://​github.com/​UV-CDAT/​uvcdat/​releases|all versions]])   * [[https://​github.com/​cdat/​cdat/​releases/​tag/​v8.1|8.1 announcement]] and features summary ([[https://​github.com/​UV-CDAT/​uvcdat/​releases|all versions]])
   * Full [[https://​uvcdat.llnl.gov/​changelog.html#​8.1|Change log]]   * Full [[https://​uvcdat.llnl.gov/​changelog.html#​8.1|Change log]]
 +
 +Note: this particular CDAT installation at LSCE (and on other machines/​servers) provides **many extra (non-CDAT) packages**. You can jump directly to the [[other:​uvcdat:​cdat_conda:​cdat_8_1#​extra_packages_list|Extra package list]] at the bottom of this page to see what is available
  
 ===== Installation with Miniconda3 ===== ===== Installation with Miniconda3 =====
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 # Install... # Install...
-$ conda install -n cdatm18_py2 -c conda-forge pillow pandas statsmodels seaborn scikit-image seawater gsw netcdf4 pyferret basemap-data-hires xlsxwriter cmocean rpy2 gdal windspharm+$ conda install -n cdatm18_py2 -c conda-forge pillow pandas statsmodels seaborn scikit-image seawater gsw netcdf4 pyferret ​ferret_datasets ​basemap-data-hires xlsxwriter cmocean rpy2 gdal windspharm
 [...] [...]
  
other/uvcdat/cdat_conda/cdat_8_1.1570189803.txt.gz · Last modified: 2019/10/04 13:50 by jypeter