other:uvcdat:cdat_conda:cdat_8_2_1
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other:uvcdat:cdat_conda:cdat_8_2_1 [2021/03/09 16:15] jypeter [Extra packages list] More cleaning |
other:uvcdat:cdat_conda:cdat_8_2_1 [2021/09/10 14:06] jypeter [Extra packages list] cleaned a bit iris and cartopy |
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| * Get version number with: ''python -c 'from cmor import *; print( (CMOR_VERSION_MAJOR, CMOR_VERSION_MINOR, CMOR_VERSION_PATCH) )' '' | * Get version number with: ''python -c 'from cmor import *; print( (CMOR_VERSION_MAJOR, CMOR_VERSION_MINOR, CMOR_VERSION_PATCH) )' '' | ||
| * <wrap hi>Warning!</wrap> [[https://github.com/PCMDI/cmor/issues/449|CMOR currently requires Python 2.7]] | * <wrap hi>Warning!</wrap> [[https://github.com/PCMDI/cmor/issues/449|CMOR currently requires Python 2.7]] | ||
| - | |||
| - | * [[http://www.ifremer.fr/vacumm/|vacumm]]: Validation, Analysis, Comparison - Utilities written in Python to validate and analyze Multi-Model outputs, and compare them to observations | ||
| - | * ''conda install -n cdatm19_py3 -c conda-forge -c vacumm vacumm'' | ||
| - | * <wrap hi>Warning!</wrap> [[https://github.com/VACUMM/vacumm/issues/15|standard install of vacumm does not work for Python3]] | ||
| - | |||
| - | * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | ||
| - | * ''conda install -n cdatm19_py3 -c stefraynaud -c conda-forge spanlib'' | ||
| - | * Test: ''python -c 'from spanlib.analyzer import Analyzer' '' | ||
| * [[http://scitools.org.uk/cartopy/|cartopy]]: a Python package designed for geospatial data processing in order to produce maps and other geospatial data analyses | * [[http://scitools.org.uk/cartopy/|cartopy]]: a Python package designed for geospatial data processing in order to produce maps and other geospatial data analyses | ||
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| * [[https://climaf.readthedocs.io/en/latest/|CliMAF]]: a Climate Model Assessment Framework | * [[https://climaf.readthedocs.io/en/latest/|CliMAF]]: a Climate Model Assessment Framework | ||
| * [[other:uvcdat:cdat_conda:climaf_install|Installation notes]] | * [[other:uvcdat:cdat_conda:climaf_install|Installation notes]] | ||
| - | |||
| - | * [[https://jiffyclub.github.io/palettable/|Palettable]]: Color palettes for Python | ||
| - | * ''conda install -n cdatm19_py3 -c conda-forge palettable'' | ||
| ==== TODO ==== | ==== TODO ==== | ||
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| FIXME: need to clean the list below, and move the packages to the ordered list further down | FIXME: need to clean the list below, and move the packages to the ordered list further down | ||
| - | * [[http://www.ifremer.fr/vacumm/|vacumm]]: Validation, Analysis, Comparison - Utilities written in Python to validate and analyze Multi-Model outputs, and compare them to observations | ||
| * [[http://unidata.github.io/netcdf4-python/|netcdf4]]: a Python interface to the netCDF C library | * [[http://unidata.github.io/netcdf4-python/|netcdf4]]: a Python interface to the netCDF C library | ||
| * [[https://github.com/PBrockmann/ipython_ferretmagic|ipython_ferretmagic]]: IPython notebook extension for ferret | * [[https://github.com/PBrockmann/ipython_ferretmagic|ipython_ferretmagic]]: IPython notebook extension for ferret | ||
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| * [[https://github.com/pierre-rouanet/dtw|dtw]]: DTW (Dynamic Time Warping) python module | * [[https://github.com/pierre-rouanet/dtw|dtw]]: DTW (Dynamic Time Warping) python module | ||
| * [[http://toblerity.org/shapely/project.html|shapely]]: a Python wrapper for GEOS for algebraic manipulation of geometry (manipulation and analysis of geometric objects in the Cartesian plane) | * [[http://toblerity.org/shapely/project.html|shapely]]: a Python wrapper for GEOS for algebraic manipulation of geometry (manipulation and analysis of geometric objects in the Cartesian plane) | ||
| - | * [[http://scitools.org.uk/cartopy/|cartopy]]: a Python package designed for geospatial data processing in order to produce maps and other geospatial data analyses | ||
| - | * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | ||
| * [[https://ajdawson.github.io/windspharm/latest/|windspharm]]: spherical harmonic wind analysis in Python | * [[https://ajdawson.github.io/windspharm/latest/|windspharm]]: spherical harmonic wind analysis in Python | ||
| * [[https://climaf.readthedocs.io/en/latest/|CliMAF]]: a Climate Model Assessment Framework | * [[https://climaf.readthedocs.io/en/latest/|CliMAF]]: a Climate Model Assessment Framework | ||
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| - | * [[http://matplotlib.org/cmocean/|cmocean]]: beautiful colormaps for oceanography | + | * [[http://scitools.org.uk/cartopy/|cartopy]]: a Python package designed for geospatial data processing in order to produce maps and other geospatial data analyses |
| + | * see also ''iris'' | ||
| + | * [[https://github.com/Try2Code/cdo-bindings|python-cdo]]: Python scripting interface of [[https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo#Documentation|cdo]] | ||
| + | * ''python-cdo'' will install the ''cdo'' package (providing the ''cdo ''executable) as a dependency | ||
| + | * see also [[https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo%7Brbpy%7D|Using CDO from python or ruby]] | ||
| + | * [[https://www.fabiocrameri.ch/colourmaps/|cmcrameri]]: Crameri's Scientific colour maps ''[color]'' | ||
| + | * the colormaps are also available in [[https://jiffyclub.github.io/palettable/scientific/|palettable.scientific]] | ||
| + | * [[http://matplotlib.org/cmocean/|cmocean]]: beautiful colormaps for oceanography ''[color]'' | ||
| + | * [[http://ferret.pmel.noaa.gov/Ferret/documentation/pyferret|pyferret]] and ''ferret_datasets'': Ferret encapsulated in Python | ||
| + | * OSGeo/[[http://www.gdal.org/|gdal]]: Geospatial Data Abstraction Library. GDAL is a translator library for raster and vector geospatial data formats | ||
| + | * [[https://pcjericks.github.io/py-gdalogr-cookbook/|Python GDAL/OGR Cookbook]] | ||
| * [[https://github.com/TEOS-10/GSW-python|gsw]]: Python implementation of the Thermodynamic Equation Of Seawater | * [[https://github.com/TEOS-10/GSW-python|gsw]]: Python implementation of the Thermodynamic Equation Of Seawater | ||
| + | * see also //seawater// | ||
| + | * [[https://scitools-iris.readthedocs.io/en/stable/|iris]]: a powerful, format-agnostic, community-driven Python package for analysing and visualising Earth science data | ||
| + | * see also ''cartopy'' | ||
| + | * install sample data with ''conda install -c conda-forge iris-sample-data'' | ||
| * [[https://joblib.readthedocs.io/en/latest/|joblib]]: running Python functions as pipeline jobs | * [[https://joblib.readthedocs.io/en/latest/|joblib]]: running Python functions as pipeline jobs | ||
| - | * [[https://jiffyclub.github.io/palettable/|Palettable]]: Color palettes for Python | + | * [[https://opencv.org/|OpenCV]]: OpenCV (Open Source Computer Vision Library) is an open-source library that includes several hundreds of computer vision algorithms. See also [[https://www.geeksforgeeks.org/opencv-python-tutorial/|OpenCV Python Tutorial]] and **scikit-image** |
| - | * [[http://ferret.pmel.noaa.gov/Ferret/documentation/pyferret|pyferret and ferret_datasets]]: Ferret encapsulated in Python | + | * [[https://jiffyclub.github.io/palettable/|Palettable]]: Color palettes for Python ''[color]'' |
| - | * [[http://www.gdal.org/|OSGeo/GDAL]]: Geospatial Data Abstraction Library. GDAL is a translator library for raster and vector geospatial data formats | + | |
| - | * [[https://pcjericks.github.io/py-gdalogr-cookbook/|Python GDAL/OGR Cookbook]] | + | |
| - | * [[https://geopandas.org/|geopandas]]: an open source project to make working with geospatial data in python easier | + | |
| - | * [[https://python-pillow.org/|pillow]]: the friendly PIL (//Python Imaging Library//) fork | + | |
| * [[http://pandas.pydata.org/|pandas]]: Python Data Analysis Library | * [[http://pandas.pydata.org/|pandas]]: Python Data Analysis Library | ||
| - | * [[https://rpy2.github.io/]]: an interface to R running embedded in a Python process | + | * [[https://geopandas.org/|geopandas]]: an open source project to make working with geospatial data in python easier |
| + | * [[https://peakutils.readthedocs.io/|PeakUtils]]: utilities related to the detection of peaks on 1D data | ||
| + | * [[https://python-pillow.org/|pillow]]: the friendly PIL (//Python Imaging Library//) fork | ||
| + | * [[https://proplot.readthedocs.io/en/latest/|proplot]]: a lightweight **matplotlib wrapper** for making beautiful, publication-quality graphics | ||
| + | * [[https://rpy2.github.io/|rpy2]]: an interface to R running embedded in a Python process | ||
| * [[http://scikit-image.org/|scikit-image]]: image processing in Python | * [[http://scikit-image.org/|scikit-image]]: image processing in Python | ||
| * [[https://scikit-learn.org/stable/index.html|scikit-learn]]: Machine Learning in Python | * [[https://scikit-learn.org/stable/index.html|scikit-learn]]: Machine Learning in Python | ||
| * [[https://seaborn.pydata.org/|seaborn]]: statistical data visualization | * [[https://seaborn.pydata.org/|seaborn]]: statistical data visualization | ||
| * [[http://pythonhosted.org/seawater/|seawater]]: Python re-write of the CSIRO seawater toolbox | * [[http://pythonhosted.org/seawater/|seawater]]: Python re-write of the CSIRO seawater toolbox | ||
| + | * see also //gsw// | ||
| * [[http://statsmodels.sourceforge.net/|statsmodels]]: a Python module that allows users to explore data, estimate statistical models, and perform statistical tests | * [[http://statsmodels.sourceforge.net/|statsmodels]]: a Python module that allows users to explore data, estimate statistical models, and perform statistical tests | ||
| + | * [[https://xoa.readthedocs.io/en/latest/|xoa]]: xarray-based ocean analysis library | ||
| + | * ''xoa'' is the successor of [[http://www.ifremer.fr/vacumm/|vacumm]] (vacumm does **not** support Python3) | ||
| ==== Removed packages ==== | ==== Removed packages ==== | ||
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| * NO removed packages! | * NO removed packages! | ||
| + | ==== Packages NOT supported in Python3 ==== | ||
| + | |||
| + | * [[https://github.com/stefraynaud/spanlib|spanlib]]: Spectral Analysis Library | ||
| + | * [[http://www.ifremer.fr/vacumm/|vacumm]]: Validation, Analysis, Comparison - Utilities written in Python to validate and analyze Multi-Model outputs, and compare them to observations | ||
| + | * Check the ''xoa'' replacement package | ||
| ===== Environments summary ===== | ===== Environments summary ===== | ||
other/uvcdat/cdat_conda/cdat_8_2_1.txt · Last modified: 2024/06/21 10:31 by jypeter
