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other:uvcdat:cdat_conda:cdat_8_2_1 [2021/09/22 14:22] jypeter [Extra packages list] Updated scikit-learn, scikit-image and statsmodels |
other:uvcdat:cdat_conda:cdat_8_2_1 [2022/01/03 14:33] jypeter [Packages that have no dependency problems] Added basemap-data |
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=== Pre-installation check with the dry-run option === | === Pre-installation check with the dry-run option === | ||
- | <code>/usr/bin/time mamba install -n cdatm19_nompi_py3 --dry-run -c conda-forge basemap basemap-data-hires cartopy cmocean cmor ferret_datasets gdal gdal geopandas glances gsw iris joblib netcdf4 palettable pandas pillow pyferret rpy2 scikit-image scikit-learn seaborn seawater shapely spyder statsmodels windspharm wrf-python xarray xlsxwriter | + | <code>/usr/bin/time mamba install -n cdatm19_nompi_py3 --dry-run -c conda-forge basemap basemap-data basemap-data-hires cartopy cmocean cmor ferret_datasets gdal gdal geopandas glances gsw iris joblib netcdf4 palettable pandas pillow pyferret rpy2 scikit-image scikit-learn seaborn seawater shapely spyder statsmodels windspharm wrf-python xarray xlsxwriter |
[... lots of information about what would be done followed by some information about how long it took ...] | [... lots of information about what would be done followed by some information about how long it took ...] | ||
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=== Actual installation === | === Actual installation === | ||
- | <code>/usr/bin/time mamba install -n cdatm19_nompi_py3 -c conda-forge basemap basemap-data-hires cartopy cmocean cmor ferret_datasets gdal gdal geopandas glances gsw iris joblib netcdf4 palettable pandas pillow pyferret rpy2 scikit-image scikit-learn seaborn seawater shapely spyder statsmodels windspharm wrf-python xarray xlsxwriter</code> | + | <code>/usr/bin/time mamba install -n cdatm19_nompi_py3 -c conda-forge basemap basemap-data basemap-data-hires cartopy cmocean cmor ferret_datasets gdal gdal geopandas glances gsw iris joblib netcdf4 palettable pandas pillow pyferret rpy2 scikit-image scikit-learn seaborn seawater shapely spyder statsmodels windspharm wrf-python xarray xlsxwriter</code> |
Resulting list of installed packages | Resulting list of installed packages | ||
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* [[https://github.com/ecmwf/cfgrib|cfgrib]]: Python interface to map GRIB files to the Unidata's Common Data Model v4 following the CF Conventions | * [[https://github.com/ecmwf/cfgrib|cfgrib]]: Python interface to map GRIB files to the Unidata's Common Data Model v4 following the CF Conventions | ||
* see also ''eccodes'' and ''pygrib'' | * see also ''eccodes'' and ''pygrib'' | ||
+ | * [[https://clustergram.readthedocs.io/|clustergram]]: visualization and diagnostics for cluster analysis | ||
* [[https://www.fabiocrameri.ch/colourmaps/|cmcrameri]]: Crameri's Scientific colour maps ''[color]'' | * [[https://www.fabiocrameri.ch/colourmaps/|cmcrameri]]: Crameri's Scientific colour maps ''[color]'' | ||
* the colormaps are also available in [[https://jiffyclub.github.io/palettable/scientific/|palettable.scientific]] | * the colormaps are also available in [[https://jiffyclub.github.io/palettable/scientific/|palettable.scientific]] | ||
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* see also //gsw// | * see also //gsw// | ||
* [[https://www.statsmodels.org/|statsmodels]]: a Python module that provides classes and functions for the estimation of many different statistical models, as well as for conducting statistical tests, and statistical data exploration. | * [[https://www.statsmodels.org/|statsmodels]]: a Python module that provides classes and functions for the estimation of many different statistical models, as well as for conducting statistical tests, and statistical data exploration. | ||
+ | * [[https://www.tensorflow.org/|tensorflow-mkl]]: an end-to-end open source machine learning platform | ||
+ | * [[https://anaconda.org/anaconda/tensorflow-mkl|tensorflow-mkl]] will install the **CPU**-based (**not GPU**) version | ||
+ | * [[https://xcdat.readthedocs.io/|xcdat]]: Xarray Extended with Climate Data Analysis Tools | ||
* [[https://xoa.readthedocs.io/en/latest/|xoa]]: xarray-based ocean analysis library | * [[https://xoa.readthedocs.io/en/latest/|xoa]]: xarray-based ocean analysis library | ||
* ''xoa'' is the successor of [[http://www.ifremer.fr/vacumm/|vacumm]] (vacumm does **not** support Python3) | * ''xoa'' is the successor of [[http://www.ifremer.fr/vacumm/|vacumm]] (vacumm does **not** support Python3) |