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--- other:uvcdat:cdat_conda:climaf_test [2019/03/06 14:58] – created jypeter
+++ other:uvcdat:cdat_conda:climaf_test [2019/05/14 17:08] (current) – jypeter
@@ Line 1: / Line 1: @@
 ====== Testing CLIMAF on ciclad ======
+Reminder: [[other:uvcdat:cdat_conda:climaf_install|JYP's CLIMAF installation notes]]
   * Copy the notebooks:
@@ Line 7: / Line 9: @@
     * standard environment: ''module load climaf''
     * JYP's environment: we assume that the required ''module load'' and environment variables have already been initialized from ''~jypmce/.bashrc''
-      * ''conda activate cdatm-nightly_py2''
+      * ''conda activate cdatm_py2''
   * Start jupyter from the //TP// directory:
     * <code>cd somewhere/Notebooks/TP_CliMAF
 jupyter notebook --no-browser</code>
+      * You can also explicitly specify a port (e.g. use the one associated with your account in ''/ciclad-home/jservon/Evaluation/CliMAF/climaf_installs/climaf_1.2.10/bin/cmip6.notebook.txt'') with\\ ''jupyter notebook %%--%%no-browser %%--%%port=pppp_number''
     * Write down the connection URL and token: ''http://localhost:8888/?token=9f7682071ab5d6a3e...''
       * The port number may be different from the default ''8888''
-    * At the end, kill the server by typing ''^C^C'' (2x ''CTRL-C'')
+    * When you are finished, <wrap em>do not forget to kill the ipython server</wrap> by typing ''^C^C'' (2x ''CTRL-C'')
   * At LSCE (or on the Windows machine where you will run the browser connecting to the server on ciclad)
-    * Use Putty to start a tunnel to the jupyter server on ciclad:
+    * Use [[https://www.chiark.greenend.org.uk/~sgtatham/putty/|Putty]] to start a tunnel to the jupyter server on ciclad:
       * Create a //New session// (or update an existing one) with the following parameters
         * //Host Name//: ''ciclad.ipsl.jussieu.fr''
@@ Line 24: / Line 27: @@
         * Connection -> SSH -> //Tunnels//
           * //Source port//: ''8000''
-          * //Destination//: ''localhost:8888'' (or the port number displayed when you started the server on ciclad)
+          * //Destination//: ''localhost:8888'' (or <wrap em>the port number displayed when you started the server on ciclad</wrap>)
           * Click on //Add// and you should get something like{{:other:uvcdat:cdat_conda:puttytunnel.png?300|}}
         * Click on //Session// (at the top left) and then //Save//
         * Click on //Open//. This will open a Putty terminal (with the tunnel) that you have to keep open as long as you need the tunnel, and remember to close at the end of your session
-        * On your local machine, open the URL you got on the server, after having replaced 8888 (or whatever the port was) with 8000 (or whatever you chose as a Source port number above)
+        * On your local machine, open the URL you got on the server, <wrap em>after having replaced 8888 (or whatever the port was) with 8000</wrap> (or whatever you chose as a Source port number above)
           * ''http://localhost:8000/?token=9f7682071ab5d6a3e...''
-  * If you are on a Win10 machine with SSL, a Mac or a Linux machine, you can get the same result with:
+  * If you are on a Win10 machine with [[other:win10wsl|WSL]], a Mac or a Linux machine, you can get the same result with:
-    * Open a shell and type: ''ssh -L 8000:localhost:8088 your_login@ciclad.ipsl.jussieu.fr''
+    * Open a shell and type: ''ssh -L 8000:localhost:8888 your_login@ciclad.ipsl.jussieu.fr''
-    * In a browser, open ''http://localhost:8000/?token=9f7682071ab5d6a3e...''
+    * In a browser, open the URL <wrap em>with the corrected 8000 port</wrap> ''http://localhost:8000/?token=9f7682071ab5d6a3e...''
+===== Notes to clean =====
+<code>/ciclad-home/jservon/Evaluation/CliMAF/climaf_installs/climaf_1.2.10/bin/climaf-notebook
+Login to ciclad
+Start an interactive session on a cluster node: qsub -IVX -l mem=9g,vmem=9g,walltime=06:00:00
+dig a tunnel from local machine to node: ssh -L 7225:cicladNNN:7225 jypmce@ciclad2.ipsl.jussieu.fr
+init conda environment: conda activate cdatm_py2
+start notebook: jupyter notebook --no-browser --port=7225 --ip=cicladNNN
+(cdatm_py2) [jypmce@ciclad20 ~]$ jupyter notebook --no-browser --port=7225 --ip=ciclad20
+[I 14:21:05.729 NotebookApp] [nb_conda_kernels] enabled, 5 kernels found
+[I 14:21:06.344 NotebookApp] [nb_conda] enabled
+[I 14:21:06.352 NotebookApp] Serving notebooks from local directory: /home/jypmce
+[I 14:21:06.352 NotebookApp] The Jupyter Notebook is running at:
+[I 14:21:06.352 NotebookApp] http://ciclad20:7225/?token=832aa384170471352b2a36444f610e54f2e16fde383a6741
+[I 14:21:06.352 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
+[C 14:21:06.365 NotebookApp]
+    To access the notebook, open this file in a browser:
+        file:///home/jypmce/.local/share/jupyter/runtime/nbserver-24895-open.html
+    Or copy and paste one of these URLs:
+        http://ciclad20:7225/?token=832aa384170471352b2a36444f610e54f2e16fde383a6741
+open in local browser: http://localhost:7225/?token=832aa384170471352b2a36444f610e54f2e16fde383a6741
+</code>
+===== Issues to report =====
+  * handling of CLIMAF_LOG_DIR when it is set or not, esp last.out
+  * rename last.out ?
+  * problem with cfile when period is not set
+  * cdo not loaded with 'module load climaf'
+  * netcdf problems with some files on ciclad20
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