other:uvcdat:cdat_conda:index
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other:uvcdat:cdat_conda:index [2017/02/24 09:31] jypeter Added section with packages that have a dependency problem |
other:uvcdat:cdat_conda:index [2019/03/07 12:24] jypeter [Installed versions] Added link to 8.1 |
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| <WRAP center round important 60%> | <WRAP center round important 60%> | ||
| - | This page describes the conda-based versions of UV-CDAT, 2.8.0 and later installed by JYP | + | This page describes the conda-based versions of UV-CDAT, ''2.8.0'' and later, installed by JYP |
| - | For versions up to 2.1, check the [[.:installed|UV-CDAT versions installed by JYP]] | + | Follow the instructions about the [[other:python:starting#conda-based_versions_of_uv-cdat|conda-based versions of UV-CDAT initialization]] for actually using a specific version |
| - | </WRAP> | + | |
| - | + | ||
| - | ===== Useful links ===== | + | |
| - | + | ||
| - | * [[http://uvcdat.llnl.gov/|Official CDAT site]] | + | |
| - | * [[https://github.com/UV-CDAT/uvcdat/wiki/|CDAT wiki]] | + | |
| - | * [[https://github.com/UV-CDAT|CDAT @ github]] | + | |
| - | * [[https://github.com/UV-CDAT/cdms|cdms]] | + | |
| - | * [[https://github.com/UV-CDAT/cdtime|cdtime]] | + | |
| - | * [[https://github.com/UV-CDAT/vcs|vcs]] | + | |
| - | * [[https://github.com/UV-CDAT/cdutil|cdutil]] | + | |
| - | * [[https://github.com/UV-CDAT/genutil|genutil]] | + | |
| - | + | ||
| - | ===== 2.8.0 ===== | + | |
| - | ==== Installation with Anaconda2 ==== | + | For technical installation details, check [[..:conda_notes|Installing and maintaining UV-CDAT with conda]] |
| - | <WRAP center round alert 60%> | + | For versions up to 2.1, check the [[..:installed|UV-CDAT versions installed by JYP]] |
| - | [[#installation_with_miniconda2|Installing with Miniconda2]] rather than Anaconda2 will save disk space! | + | |
| </WRAP> | </WRAP> | ||
| - | <code># Keep a trace of what will be installed, with/without conda-forge | + | ===== Installed versions ===== |
| - | conda create --dry-run -n uvcdat-2.8.0 -c uvcdat uvcdat=2.8.0 > /home/scratch01/jypeter/uvcdat-2.8.0_install_dry_no-forge_160220.txt | + | |
| - | conda create --dry-run -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0 > /home/scratch01/jypeter/uvcdat-2.8.0_install_dry_with-forge_160220.txt | + | |
| - | # Do the actual installation | + | Listed with the most recent version at the top |
| - | conda create -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0</code> | + | |
| - | Lists of installed packages: {{ :other:uvcdat:uvcdat-2.8.0_install_dry_with-forge_160220.txt |with conda-forge}} or {{ :other:uvcdat:uvcdat-2.8.0_install_dry_no-forge_160220.txt |without conda-forge}} | + | * [[.::cdat_8_1|8.1]] |
| - | Size of ''/home/share/unix_files/cdat/anaconda2'': | + | * [[.::cdat_8_0_py2|8.0]] |
| - | * before installation: **2.1G** | + | |
| - | * after installation: **4.6G** | + | |
| - | ==== Installation with Miniconda2 ==== | + | * [[.:cdat_2_12|2.12]] |
| - | Note: after installation, we use **//only// 2.7G** (details below), compared to the 4.6G of the Anaconda2 installation | + | * [[.:cdat_2_10|2.10]] |
| - | <code># Keep a trace of what will be installed (with conda-forge) | + | * [[.:cdat_2_8_0|2.8.0]] |
| - | conda create --dry-run -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0 > /home/scratch01/jypeter/uvcdat-2.8.0_install_dry_with-forge_160220.txt | + | |
| - | # Do the actual installation | ||
| - | conda create -n uvcdat-2.8.0 -c conda-forge -c uvcdat uvcdat=2.8.0</code> | ||
| - | Lists of installed packages: {{ :other:uvcdat:uvcdat-2.8.0_install_dry_with-forge_160221.txt |List of installed packages}} | + | ===== Useful links ===== |
| - | + | ||
| - | <code>bash-4.1$ conda info --envs | + | |
| - | # conda environments: | + | |
| - | # | + | |
| - | uvcdat-2.8.0 /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | root * /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 2.7G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/pkgs | + | |
| - | 2.6G /home/share/unix_files/cdat/miniconda2/pkgs | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/* | + | |
| - | 4.4M /home/share/unix_files/cdat/miniconda2/bin | + | |
| - | 4.0K /home/share/unix_files/cdat/miniconda2/conda-bld | + | |
| - | 276K /home/share/unix_files/cdat/miniconda2/conda-meta | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs | + | |
| - | 20K /home/share/unix_files/cdat/miniconda2/etc | + | |
| - | 3.8M /home/share/unix_files/cdat/miniconda2/include | + | |
| - | 99M /home/share/unix_files/cdat/miniconda2/lib | + | |
| - | 4.0K /home/share/unix_files/cdat/miniconda2/LICENSE.txt | + | |
| - | 665M /home/share/unix_files/cdat/miniconda2/pkgs | + | |
| - | 16K /home/share/unix_files/cdat/miniconda2/share | + | |
| - | 8.0K /home/share/unix_files/cdat/miniconda2/ssl | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/* | + | |
| - | 56M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/bin | + | |
| - | 1.9M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/conda-meta | + | |
| - | 48K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/etc | + | |
| - | 420K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/imports | + | |
| - | 67M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/include | + | |
| - | 1.7G /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/lib | + | |
| - | 24K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/man | + | |
| - | 3.1M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/mkspecs | + | |
| - | 16M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/mod | + | |
| - | 3.5M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/plugins | + | |
| - | 57M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/share | + | |
| - | 4.3M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/ssl | + | |
| - | 2.7M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/tests | + | |
| - | 12K /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/var | + | |
| - | 107M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0/vistrails</code> | + | |
| - | + | ||
| - | ==== Cloning uvcdat to add specific packages for LSCE ==== | + | |
| - | + | ||
| - | Note: using hard links, cloning a full environment only adds an extra 100M of disk space | + | |
| - | + | ||
| - | <code>bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 2.7G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | + | ||
| - | bash-4.1$ conda create -n cdatm14 --clone uvcdat-2.8.0 | + | |
| - | [...] | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 2.8G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.0G /home/share/unix_files/cdat/miniconda2/envs/cdatm14 | + | |
| - | 82M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0</code> | + | |
| - | + | ||
| - | === Packages that have no dependency problems === | + | |
| - | + | ||
| - | After cloning, we are ready to install some extra packages that may be requested by LSCE users | + | |
| - | + | ||
| - | <code># Keep a trace of what will be installed | + | |
| - | bash-4.1$ conda install --dry-run -n cdatm14 -c conda-forge -c uvcdat -c vacumm pillow pandas statsmodels seaborn scikit-image seawater gsw netcdf4 pyferret vacumm > /home/scratch01/jypeter/lsce-extra_01_install_160223.txt | + | |
| - | + | ||
| - | # Install... | + | |
| - | bash-4.1$ conda install -n cdatm14 -c conda-forge -c uvcdat -c vacumm pillow pandas statsmodels seaborn scikit-image seawater gsw netcdf4 pyferret vacumm | + | |
| - | + | ||
| - | # Check the disk space after installation | + | |
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 3.6G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.4G /home/share/unix_files/cdat/miniconda2/envs/cdatm14 | + | |
| - | 82M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0 | + | |
| - | + | ||
| - | # Check the disk space again after cleaning | + | |
| - | bash-4.1$ conda clean all | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2 | + | |
| - | 2.9G /home/share/unix_files/cdat/miniconda2 | + | |
| - | + | ||
| - | bash-4.1$ du -sh /home/share/unix_files/cdat/miniconda2/envs/* | + | |
| - | 2.4G /home/share/unix_files/cdat/miniconda2/envs/cdatm14 | + | |
| - | 82M /home/share/unix_files/cdat/miniconda2/envs/uvcdat-2.8.0</code> | + | |
| - | + | ||
| - | Lists of installed packages: {{ :other:uvcdat:lsce-extra_01_install_160223.txt |}} | + | |
| - | + | ||
| - | === Other packages === | + | |
| - | + | ||
| - | * ''shapely'' request a downgrade of ''geos'' when installed from //conda-forge// (see [[https://github.com/Toblerity/Shapely/issues/472|github issue]]) but it will work when installed from the default repo | + | |
| - | * ''conda install -n cdatm14 shapely'' | + | |
| - | * We get a slightly older version (//1.5.**16**-py27_0// instead of //1.5.**17**-np111py27_2//) | + | |
| + | * [[http://uvcdat.llnl.gov/|Official CDAT site]] | ||
| + | * [[https://github.com/UV-CDAT/uvcdat/wiki/|CDAT wiki]] | ||
| + | * [[https://github.com/UV-CDAT|CDAT @ github]] | ||
| + | * [[https://github.com/UV-CDAT/cdms|cdms]] | ||
| + | * [[https://github.com/UV-CDAT/cdtime|cdtime]] | ||
| + | * [[https://github.com/UV-CDAT/vcs|vcs]] | ||
| + | * [[https://github.com/UV-CDAT/cdutil|cdutil]] | ||
| + | * [[https://github.com/UV-CDAT/genutil|genutil]] | ||
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other/uvcdat/cdat_conda/index.txt · Last modified: 2024/03/22 09:56 by jypeter
