other:uvcdat:cdat_conda:climaf_install
Installing CLIMAF with CDAT
The CLIMAF installation is a special case, because we may want to use it with the Python installed for CDAT, but it is not installed using conda and should theoretically work with any available Python, as long as the directory where it is installed is correctly defined in the PYTHONPATH
variable
We follow the steps for the installation of a non-standard server
- Go to the appropriate installation directory (we choose the directory where we have also installed miniconda3):
- LSCE:
cd /home/share/unix_files/cdat
- ciclad:
/data/jypmce/cdat/
git clone https://github.com/senesis/climaf climaf
- Add CLIMAF to the PYTHONPATH environment variable
- LSCE & tcsh:
setenv PYTHONPATH ${PYTHONPATH}:/home/share/unix_files/cdat/climaf
- LSCE & bash:
export PYTHONPATH=${PYTHONPATH}:/home/share/unix_files/cdat/climaf
- ciclad: same as above, using
/data/jypmce/cdat/climaf
- Test the installation
- make sure the Requirements are available:
- LSCE:
module load netcdf/4 nco cdo ncl ncview
- ciclad:
module load netcdf4 nco cdo ncl/6.3.0
- optional: start an X server
cd climaf/testing ./test_install.sh
- Once the tests are OK, add the required module load and environment variables definitions to the
.basrc
and.cshrc
files- Maybe these lines should go to the
.profile
and.login
files…(check Bash Startup Files) - Loading some modules may have some side-effects on CDAT. If that's the case, use
module purge
before initializing CDAT - LSCE: add to your
~/.cshrc
file (check ciclad below if you are a bash user)# Prerequisites for using CLIMAF module load netcdf/4 nco cdo ncl ncview # CLIMAF environment variables setenv CLIMAF /home/share/unix_files/cdat/climaf setenv PYTHONPATH "${PYTHONPATH}:${CLIMAF}" #setenv PYTHONPATH $CLIMAF setenv PATH "${PATH}:${CLIMAF}/bin" setenv CLIMAF_CACHE "/home/scratch01/${USER}/climaf_cache" setenv TMPDIR $CLIMAF_CACHE setenv CLIMAF_LOG_DIR $CLIMAF_CACHE #conda activate cdatm_py2
- ciclad: add to your
~/.bashrc
file# Prerequisites for using CLIMAF when not using the # default 'module load climaf' module load netcdf4 nco cdo ncl/6.3.0 # CLIMAF environment variables export CLIMAF=/data/jypmce/cdat/climaf #export PYTHONPATH=$PYTHONPATH:$CLIMAF export PYTHONPATH=$CLIMAF export PATH=$PATH:$CLIMAF/bin export CLIMAF_CACHE=/data/jypmce/climaf_cache export TMPDIR=$CLIMAF_CACHE export CLIMAF_LOG_DIR=$CLIMAF_CACHE #conda activate cdatm_py2
- Open a new shell and run the tests again. If there is an error that was not there, check what you have added to the shell init files
We are now ready to start using CLIMAF on ciclad!
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other/uvcdat/cdat_conda/climaf_install.txt · Last modified: 2019/03/13 15:06 by jypeter