This is an old revision of the document!
This page lists the packages (usually) installed in the LSCE-IPSL CDAT versions that are not available in the standard UV-CDAT (i.e. there are no ccmake configuration switches to get them installed).
Clean this section!
PIL does not seem to be maintained any longer and should be replaced by pillow
pip uninstall PIL pip install pillow
Check the installed version with
python -c 'import PIL; print dir(PIL)' ['PILLOW_VERSION', 'VERSION', '__builtins__', '__doc__', '__file__', '__name__', '__package__', '__path__', '_plugins']
Use one of the basemap examples to check if everything is working
from mpl_toolkits.basemap import Basemap import matplotlib.pyplot as plt # setup Lambert Conformal basemap. # set resolution=None to skip processing of boundary datasets. m = Basemap(width=12000000,height=9000000,projection='lcc', resolution=None,lat_1=45.,lat_2=55,lat_0=50,lon_0=-107.) m.bluemarble() plt.show()
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 2.4.2 | ? (bundled?) Sep 11 2015 (with pandas) |
1.5.1 | VB_10 | 2.4.2 | Sep 11 2015 (with pandas) |
2.1.0 | LSCE_13 | 2.2 | ? (bundled?) |
2.1.0 | VB_13 | 2.2 | ? (bundled?) |
Check the installed version with: python -c 'import dateutil; print dateutil.__version__'
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 2014.10 | ? (bundled?) |
1.5.1 | VB_10 | 2015.4 | ? (bundled?) |
2.1.0 | LSCE_13 | 2014.10 | ? (bundled?) |
2.1.0 | VB_13 | 2014.10 | ? (bundled?) |
Bundled?
Check the installed version with: python -c 'import pytz; print pytz.__version__'
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 0.16.2 | Sep 11 2015 |
1.5.1 | VB_10 | 0.16.2 | Sep 11 2015 |
2.1.0 | LSCE_13 | 0.16.2 | Sep 11 2015 |
2.1.0 | VB_13 | 0.16.2 | Sep 11 2015 |
pip install pandas
setenv mydate `date +“%Y%m%d_%H%M”` ; setenv mylogf $ALL_LOGS_DIR/pandas_install_${CDAT_ID}_${mydate}.log ; ( /usr/bin/nohup /usr/bin/time pip install pandas > & $mylogf & ) ; sleep 10 ; tail -n +1 -f $mylogf
Check the installed version with: python -c 'import pandas; print pandas.__version__'
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 0.12.0[.5] | May 27 2015 |
1.5.1 | VB_10 | ||
2.1.0 | LSCE_13 | ||
2.1.0 | VB_13 |
pip install cartopy
Check the installed version with: python -c 'import cartopy; print cartopy.__version__'
-D CDAT_BUILD_BASEMAP=ON
([INFO] Setting build package – GEOS ON – as required by basemap
) UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 3.3.5 | ? |
1.5.1 | VB_10 | 3.3.5 | ? |
2.1.0 | LSCE_13 | 3.3.5 | ? |
2.1.0 | VB_13 | 3.3.5 | ? |
Check the installed version with: which geos-config
and geos-config –version
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 1.2.1 | May 27 2015 |
1.5.1 | VB_10 | 1.2.1 | May 27 2015 |
2.1.0 | LSCE_13 | 1.2.1 | May 27 2015 |
2.1.0 | VB_13 | 1.2.1 | May 27 2015 |
pip install pyshp
Check the installed version with: python -c 'import shapefile; print shapefile.__version__
'
We use the PROJ.4 library already installed on the system!
Server | version | JYP installation |
---|---|---|
asterix obelix | proj-4.7.0-2_0.el6.x86_64 proj-devel-4.7.0-2_0.el6.x86_64 | LSCE_nn |
ciclad | proj-4.7.0-1.el6.x86_64 proj-devel-4.7.0-1.el6.x86_64 | ciclas_nn |
Virtual Machine | proj-4.8.0-5.fc20.x86_64 proj-devel.x86_64 0:4.8.0-5.fc20 | VB_nn |
Note: if proj-devel is not installed, you will get the following kind of error when trying to install Cartopy. Just install it with yum install proj-devel
and try installing Cartopy again
lib/cartopy/trace.cpp:237:22: fatal error: proj_api.h: No such file or directory #include "proj_api.h" ^ compilation terminated. error: command 'gcc' failed with exit status 1
Check the installed version with: rpm -qa | grep '^proj'
python -c 'import Cython; print Cython.__version__'
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 0.16 | bundled with UV-CDAT |
1.5.1 | VB_10 | 0.16 | bundled with UV-CDAT |
2.1.0 | LSCE_13 | 0.16 | bundled with UV-CDAT |
2.1.0 | VB_13 | 0.16 | bundled with UV-CDAT |
python -c 'import numpy; print numpy.__version__'
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 1.7.1 | bundled with UV-CDAT |
1.5.1 | VB_10 | 1.7.1 | bundled with UV-CDAT |
2.1.0 | LSCE_13 | 1.9.0 | bundled with UV-CDAT |
2.1.0 | VB_13 | 1.9.0 | bundled with UV-CDAT |
-D CDAT_BUILD_SHAPELY=ON
pip install shapely –upgrade
python -c 'import shapely; print shapely.__version__'
UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 1.2.14 | bundled with UV-CDAT? |
1.5.1 | VB_10 | 1.5.8 | May 27 2015 (with Cartopy) |
2.1.0 | LSCE_13 | 1.5.9 | -D CDAT_BUILD_SHAPELY=ON )May 29 2015 |
2.1.0 | VB_13 | 1.5.8 | -D CDAT_BUILD_SHAPELY=ON )May 27 2015 (with Cartopy) |
python -c 'import six; print six.__version__'
-D CDAT_BUILD_MATPLOTLIB=ON
([INFO] Setting build package – SIX ON – as required by Matplotlib
) UV-CDAT version | JYP installation | Package version | Date |
---|---|---|---|
1.5.1 | LSCE_10 | 1.7.3 | ? |
1.5.1 | VB_10 | 1.9.0 | ? |
2.1.0 | LSCE_13 | 1.7.2 | bundled with UV-CDAT |
2.1.0 | VB_13 | 1.7.2 | bundled with UV-CDAT |
[ PMIP3 Wiki Home ] - [ Help! ] - [ Wiki syntax ]