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other:uvcdat:extra

Extra packages installed in UV-CDAT

This page lists the packages (usually) installed in the LSCE-IPSL CDAT versions that are not available in the standard UV-CDAT (i.e. there are no ccmake configuration switches to get them installed).

pip documentation

You may need to do some cleaning, in order to be sure that pip is not going to get something from its installation cache! Go check the content of /tmp/pip-build/
  • To install the latest version of “SomeProject”:
    pip install 'SomeProject'
  • To install a specific version:
    pip install 'SomeProject==1.4'
  • To upgrade an installed version:
    pip install SomeProject --upgrade

Requests

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
2.1.0 LSCE_13 2.8.1 Oct 20 2015
2.1.0 ciclad_13 2.8.1 Oct 20 2015

Installing

Testing

Check the installed version with: python -c 'import requests; print requests.__version__'

find_agg

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
2.1.0 LSCE_13 0.5.1 - v0.5 2015-07-06 Oct 20 2015
2.1.0 ciclad_13 0.5.1 - v0.5 2015-07-06 Oct 20 2015

Installing

Testing

Check the installed version with: find_agg -V

PIL and pillow

FIXME Clean this section! FIXME

PIL does not seem to be maintained any longer and should be replaced by pillow

Replacing PIL with pillow

More information

pip uninstall PIL
pip install pillow

Testing

Check the installed version with

python -c 'import PIL; print dir(PIL)'
['PILLOW_VERSION', 'VERSION', '__builtins__', '__doc__', '__file__', '__name__', '__package__', '__path__', '_plugins']

Use one of the basemap examples to check if everything is working

from mpl_toolkits.basemap import Basemap
import matplotlib.pyplot as plt
# setup Lambert Conformal basemap.
# set resolution=None to skip processing of boundary datasets.
m = Basemap(width=12000000,height=9000000,projection='lcc',
            resolution=None,lat_1=45.,lat_2=55,lat_0=50,lon_0=-107.)
m.bluemarble()
plt.show()

python-dateutil

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 1.5-mpl
2.4.2
? (bundled?)
Sep 11 2015 (with pandas)
1.5.1 VB_10 1.5-mpl
2.4.2
? (bundled?)
Sep 11 2015 (with pandas)
2.1.0 LSCE_13 2.2 ? (bundled?)
2.1.0 VB_13 2.2 ? (bundled?)

Installing

  • Bundled with another package?
  • A newer version of python-dateutil was installed during pandas installation in the old CDAT 1.5.1…

Testing

Check the installed version with: python -c 'import dateutil; print dateutil.__version__'

pytz

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 2014.10 ? (bundled?)
1.5.1 VB_10 2015.4 ? (bundled?)
2.1.0 LSCE_13 2014.10 ? (bundled?)
2.1.0 VB_13 2014.10 ? (bundled?)

Installing

Bundled?

Testing

Check the installed version with: python -c 'import pytz; print pytz.__version__'

pandas

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 0.16.2 Sep 11 2015
1.5.1 VB_10 0.16.2 Sep 11 2015
2.1.0 LSCE_13 0.16.2 Sep 11 2015
2.1.0 VB_13 0.16.2 Sep 11 2015

Installing

Testing

Check the installed version with: python -c 'import pandas; print pandas.__version__'

rpy2

cartopy

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 0.12.0[.5] May 27 2015
1.5.1 VB_10
2.1.0 LSCE_13
2.1.0 VB_13

Installing

Testing

Check the installed version with: python -c 'import cartopy; print cartopy.__version__'

GEOS

  • Required by: cartopy
  • Bundled with CDAT if we use -D CDAT_BUILD_BASEMAP=ON ([INFO] Setting build package – GEOS ON – as required by basemap)

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 3.3.5 ?
1.5.1 VB_10 3.3.5 ?
2.1.0 LSCE_13 3.3.5 ?
2.1.0 VB_13 3.3.5 ?

Testing

Check the installed version with: which geos-config and geos-config --version

pyshp

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 1.2.1 May 27 2015
1.5.1 VB_10 1.2.1 May 27 2015
2.1.0 LSCE_13 1.2.1 May 27 2015
2.1.0 VB_13 1.2.1 May 27 2015

Installing

  • pip install pyshp

Testing

Check the installed version with: python -c 'import shapefile; print shapefile.__version__'

PROJ.4

Versions installed

We use the PROJ.4 library already installed on the system!

Server version JYP
installation
asterix
obelix
proj-4.7.0-2_0.el6.x86_64
proj-devel-4.7.0-2_0.el6.x86_64
LSCE_nn
ciclad proj-4.7.0-1.el6.x86_64
proj-devel-4.7.0-1.el6.x86_64
ciclas_nn
Virtual Machine proj-4.8.0-5.fc20.x86_64
proj-devel.x86_64 0:4.8.0-5.fc20
VB_nn

Note: if proj-devel is not installed, you will get the following kind of error when trying to install Cartopy. Just install it with yum install proj-devel and try installing Cartopy again

    lib/cartopy/trace.cpp:237:22: fatal error: proj_api.h: No such file or directory
     #include "proj_api.h"
                          ^
    compilation terminated.
    error: command 'gcc' failed with exit status 1

Testing

Check the installed version with: rpm -qa | grep '^proj'

spectrum

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
2.1.0 LSCE_13 0.6.1 Apr 14 2016

Installing

  • pip install spectrum

Testing

Check the installed version with: python -c 'import spectrum'

statsmodels

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
2.1.0 LSCE_13 0.6.1 Apr 14 2016

Installing

  • pip install statsmodels

Testing

Check the installed version with: python -c 'import statsmodels; print statsmodels.version.version'

seaborn

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
2.1.0 LSCE_13 0.7.0 Apr 14 2016

Installing

  • pip install seaborn

Testing

Check the installed version with: python -c 'import seaborn; print seaborn.__version__'

scikit-image

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 0.8.2
Newer versions fail because we have Cython 0.16, but require >= 0.21
Jun 01 2016
2.1.0 LSCE_13 0.8.2
Newer versions fail because we have Cython 0.16, but require >= 0.21
Jun 01 2016

Installing

  • for CDAT up to 2.1.0: pip install 'scikit-image==0.8.2'

Testing

Check the installed version with: python -c 'import skimage; print skimage.__version__'

scikit-learn

Versions installed

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 0.17.1 Jun 01 2016
2.1.0 LSCE_13 0.17.1 Jun 01 2016

Installing

  • pip install scikit-learn

Testing

Check the installed version with: python -c 'import sklearn; print sklearn.__version__'

Cython

  • Version: python -c 'import Cython; print Cython.__version__'
UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 0.16 bundled with UV-CDAT
1.5.1 VB_10 0.16 bundled with UV-CDAT
2.1.0 LSCE_13 0.16 bundled with UV-CDAT
2.1.0 VB_13 0.16 bundled with UV-CDAT

numpy

UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 1.7.1 bundled with UV-CDAT
1.5.1 VB_10 1.7.1 bundled with UV-CDAT
2.1.0 LSCE_13 1.9.0 bundled with UV-CDAT
2.1.0 VB_13 1.9.0 bundled with UV-CDAT

shapely

  • CDAT cmake option: -D CDAT_BUILD_SHAPELY=ON
  • If needed, explicit install/updgrade with: pip install shapely –upgrade
  • Version: python -c 'import shapely; print shapely.__version__'
  • Required by: cartopy
UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 1.2.14 bundled with UV-CDAT?
1.5.1 VB_10 1.2.14
1.5.8
bundled with UV-CDAT?
May 27 2015 (with Cartopy)
2.1.0 LSCE_13 1.3.2
1.5.9
bundled with UV-CDAT (-D CDAT_BUILD_SHAPELY=ON)
May 29 2015
2.1.0 VB_13 1.3.2
1.5.8
bundled with UV-CDAT (-D CDAT_BUILD_SHAPELY=ON)
May 27 2015 (with Cartopy)

six

  • Version: python -c 'import six; print six.__version__'
  • Required by: cartopy
  • Bundled with CDAT if we use -D CDAT_BUILD_MATPLOTLIB=ON ([INFO] Setting build package – SIX ON – as required by Matplotlib)
UV-CDAT
version
JYP
installation
Package
version
Date
1.5.1 LSCE_10 1.7.3 ?
1.5.1 VB_10 1.9.0 ?
2.1.0 LSCE_13 1.7.2 bundled with UV-CDAT
2.1.0 VB_13 1.7.2 bundled with UV-CDAT





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other/uvcdat/extra.txt · Last modified: 2016/06/01 13:52 by jypeter