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--- other:uvcdat:installed [2014/04/14 09:43]
jypeter created
+++ other:uvcdat:installed [2015/02/02 15:10]
jypeter
@@ Line 3: / Line 3: @@
 <note tip>
 [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]]</note>
+===== Useful links =====
+  * [[https://github.com/UV-CDAT/uvcdat|UV-CDAT @ github]]
+  * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]]
+===== 2.1.0 =====
+Official details :
+cdat_multi configuration version: 13
+==== Available configurations ====
+^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
+|  LSCE  |  LSCE_13  |  2.7.8, Jan 22 2015  | Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
+|  VirtualBox\\ FC20  |  VB_13  |  | Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) |
+==== Log files ====
+^  Machine  ^  make  ^  ctest  ^
+|  LSCE  | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
+|  VirtualBox\\ FC20  | {{:other:|txt}} | {{:other:|txt}} |
+=== make summary ===
+<code>
+</code>
+=== ctest summary ===
+<code>
+</code>
+==== ccmake options ====
+<code>
+ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CDAT_BUILD_PARAVIEW=OFF -D CDAT_BUILD_GUI=OFF -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR
+ccmake -D GIT_PROTOCOL=git:// -DCDAT_BUILD_MODE=DEFAULT -DCDAT_BUILD_CMOR=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL   -D CDAT_BUILD_BASEMAP=ON -D CDAT_BUILD_MATPLOTLIB=ON -D CDAT_BUILD_SCIENTIFICPYTHON=ON -D CDAT_BUILD_SCIKITS=ON -D CDAT_BUILD_SHAPELY=ON -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON -D UVCMETRICS_TEST_DATA_DIRECTORY=/home/scratch01/jypeter/uvcmetrics_test_data -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON   $CDAT_MAIN_DIR
+</code>
+=== BUILD_TESTING ===
+Note: we have **not** explicitly requested to turn on the testing, because it is supposed to be //ON// by default
+=== GIT_PROTOCOL ===
+We have used **-D GIT_PROTOCOL=git:%%//%%**. See the [[#section151|1.5.1 options]] for more details
+=== LIBXML2 & LIBXSLT ===
+We have tried to use the system's installed //libxml2// and //libxslt// libraries by using the following options:
+**-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON**
+Unfortunately, uvcdat still compiles the new version of the libraries, and then the system's cmake gets confused and we get **lots** of warning messages of the following kind each time cmake is called.
+<code>
+cmake --version
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake version 2.8.12.2
+</code>
+===== 2.0.0 =====
+Official details :
+cdat_multi configuration version: 12
+===== 2.0.beta =====
+Official details : [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release#release-planned-july-2014|2.0.beta]]
+cdat_multi configuration version: 11
+==== Available configurations ====
+^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
+|  LSCE  |  LSCE_11  |  2.7.7, Aug  1 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
+|  ciclad |  ciclad_11-ng  |  2.7.7, Aug  4 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
+==== Log files ====
+^  Machine  ^  make  ^  ctest  ^
+|  LSCE  | {{:other:uvcdat:lsce_cdat_make_uv-2.0.beta_x86_64_gcc4_20140801_1801.txt|txt}} | {{:other:uvcdat:lsce_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140804_1209.txt|txt}} |
+|  ciclad-ng  | {{:other:uvcdat:ciclad-ng_cdat_make_uv-2.0.beta_x86_64_gcc4_20140804_1725.txt|txt}} | {{:other:uvcdat:ciclad-ng_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140805_1017.txt|txt}} |
+=== make summary ===
+<code>
+Packages reported as FAILED, see logs
+                contrib/pyclimate
+                contrib/MSU
+</code>
+=== ctest summary ===
+<code>
+% tests passed, 35 tests failed out of 74
+Total Test time (real) = 1020.63 sec
+The following tests FAILED:
+- cdms_test (Failed)
+- cdms_verify (Failed)
+- cdms_load_and_plot_axis_variable (Failed)
+- run_uvcdat_gui_tests (Failed)
+- test177_regrid_mask (Failed)
+- testDoutriaux (Failed)
+- testMarvel (Failed)
+- testUnits (Failed)
+- testRaynaud (Failed)
+- testDateline (Failed)
+- testDiag (Failed)
+- testSo2TasACCESSFails (Failed)
+- testSo2Tas (Failed)
+- testWrite (Failed)
+- testMvCdmsRegrid (Failed)
+- testConserv (Failed)
+- testEsmfVsLibcf (Failed)
+- testEsmfInterface1 (Failed)
+- testTasRegrid (Failed)
+- testRegrid2 (Failed)
+- testEsmf_3x4_6x8_Conserve_Masked (Failed)
+- testMvGenericRegrid (Failed)
+- testSalinity (Failed)
+- testEsmfSalinity (Failed)
+- testEsmf (Failed)
+- testBergman (Failed)
+- testDistSrc (Failed)
+- vcs_verify_import (Failed)
+- vcs_verify_init (Failed)
+- vcs_verify_boxfill_basics (Failed)
+- vcs_verify_proj_basics (Failed)
+- vcs_verify_fillarea_basics (Failed)
+- CDMS_Test_17 (Failed)
+- CDMS_Test_multiple_formats (Failed)
+- diags_test_01 (Failed)
+</code>
+==== ccmake options ====
+<code>
+ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR
+</code>
+==== Installation environment ====
+=== LSCE ===
+Same as for 1.5.1
+=== ciclad-ng ===
+Same as for 1.5.1
+=== VirtualBox FC20 ===
+==== Disk space ====
+The following disk space was required for the installation
+==== Extra packages installed ====
+=== Requests: HTTP for Humans ===
+Web site: http://docs.python-requests.org/en/latest/
+Install: ''pip install requests''
 ===== 1.5.1 =====
@@ Line 9: / Line 191: @@
 cdat_multi configuration version: 10
+==== Special warning ====
+The default backend for matplotlib (Agg) could not be used for interactive graphics and we had to manually update the content of the default matplotlibrc
+<code>
+<INSTALL>/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc
+#backend      : Agg
+backend      : Qt4Agg
+</code>
+==== Available configurations ====
+^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
+|  LSCE  |  LSCE_10  | 2.7.4, Apr 23 2014 | Had to use recompiled\\ cmake (2.8.12.2) and Qt (4.8.5)\\ because the system ones\\ were too old|
+|  ciclad  |  ciclad_10  |  **FAILED**\\ :-(  | Linux too old,\\ even when specifying recent\\ gcc44/gfortran44/g++44 compilers,\\ we end up with too many problems, ... :-(  |
+|  ciclad-ng  |  ciclad_10-ng  |  2.7.4, Apr 22 2014 | Had to use recompiled\\ cmake (2.8.12.2) and Qt (4.8.5)\\ because the system ones\\ were too old |
+|  VirtualBox\\ FC20  |  VB_10  | |
+==== Log files ====
+^  Machine  ^  make  ^  ctest  ^
+|  LSCE  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140423_1108.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140423_1148.txt|txt}}  |
+|  ciclad  |  :-(  |  :-(  |
+|  ciclad-ng  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140422_1445.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140422_1541.txt|txt}}  |
+|  VirtualBox\\ FC20  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_vb_20140427_2220.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_vb_20140427_2352.txt|txt}}  |
+=== make summary ===
+<code>
+Packages reported as FAILED, see logs
+                contrib/pyclimate
+                contrib/MSU
+                contrib/windspharm
+</code>
+=== ctest summary ===
+<code>
+% tests passed, 8 tests failed out of 71
+The following tests FAILED:
+- run_uvcdat (Failed)
+- cdms_test (Failed)
+- cdms_verify (Failed)
+- cdms_load_and_plot_axis_variable (Failed)
+- run_uvcdat_gui_tests (Failed)
+- vcs_test_anim_basic (Failed)
+- CDMS_Test_18 (Failed)
+- CDMS_Test_multiple_formats (Failed)
+Errors while running CTest
+</code>
+==== ccmake options ====
+<code>
+ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CDAT_BUILD_PARAVIEW=OFF -D CDAT_BUILD_GUI=OFF -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR
+</code>
+=== BUILD_TESTING ===
+If you want to test UV-CDAT with 'ctest' after the build, it must be installed with **-D BUILD_TESTING=ON** (which seems to be defined by default so we have not added it explicitly to the ccmake options)
+=== GIT_PROTOCOL ===
+It's better to specify explicitly the git protocol to use for downloading submodules in $CDAT_MAINDIR/contrib (**-D GIT_PROTOCOL=git:%%//%%** for all the machines we used), otherwise ccmake gets stuck in a long guru meditation when it's waiting/trying to download external sources.
+In order to determine which protocol to use, go to a temporary directory and check by hand which protocol is working. If nothing happens (seems to hang and you have to interrupt with CTRL-C), it's NOT working:
+  * git clone http:%%//%%github.com/UV-CDAT/scimake.git
+  * git clone git:%%//%%github.com/UV-CDAT/scimake.git
+IF "git clone git" fails, THEN specify '-D GIT_PROTOCOL=http:%%//%%', otherwise specify '-D GIT_PROTOCOL=git:%%//%%'
+WARNING! WARNING! Check the git protocol overrides remaining from previous CDAT installations with **git config --global -l**, in remove some lines in ~/.gitconfig if need be...
+=== CDAT_BUILD_PARALLEL ===
+We have used **-D CDAT_BUILD_PARALLEL=OFF** in order to disable parallelism and avoid potential mpi-related problems
+<note warning>What is really disabled/affected by this option??</note>
+=== LIBXML2 & LIBXSLT ===
+We have used the following options in order to use the xml2/xslt libraries preinstalled on the system and avoid potential compilation problems. As of version 1.5.1, uv-cdat can compile libxml2 if the one available on the system is too old, but the rest of the installation still picks up the old system xml2 library :-(
+**-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON**
+=== CDAT_BUILD_GUI ===
+We have to disable the GUI in 1.5.0-1, with **-D CDAT_BUILD_GUI=OFF**. Otherwise ccmake does not work due to vistrails related problems :-(
+=== CDAT_BUILD_PARAVIEW ===
+Paraview can't be installed, due to R include files not found. Disabling the GUI with ''-D CDAT_BUILD_GUI=OFF'' is not enough, so we have to disable it with **-D CDAT_BUILD_PARAVIEW=OFF**. We then have a problem with pixman being built before freetype so we have to add that pixman depends on freetype
+''in src/CMake/cdat_modules/pixman_deps.cmake:''
+''set(pixman_deps ${pkgconfig_pkg} ${zlib_pkg})''
+=> ''set(pixman_deps ${pkgconfig_pkg} ${zlib_pkg} ${freetype_pkg})''
+==== Installation environment ====
+=== LSCE ===
+|  /etc/redhat-release  | Red Hat Enterprise Linux Server release 6.5 (Santiago) |
+|  uname -a  | Linux asterix1 2.6.32-431.3.1.el6.x86_64\\ #1 SMP Fri Dec 13 06:58:20 EST 2013 x86_64 x86_64 x86_64 GNU/Linux |
+|  gcc  | gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) |
+|  gfortran  | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) |
+|  g++  | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) |
+|  Qt  | qt-4.6.2-28.el6_5.x86_64 **=> had to install 4.8.5** |
+|  cmake  | cmake-2.6.4-5.el6.x86_64 **=> had to install 2.8.12.2** |
+=== ciclad ===
+|  /etc/redhat-release  | CentOS release 5.2 (Final) |
+|  uname -a  | Linux ciclad1.ipsl.jussieu.fr 2.6.18-348.4.1.el5\\ #1 SMP Tue Apr 16 15:40:06 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux |
+|  **gcc44**  | gcc44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) |
+|  **gfortran44**  | GNU Fortran (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) |
+|  **g++44**  | g++44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) |
+|  Qt  | qt4-4.7.4-0 **=> had to install 4.8.5** |
+|  cmake  | cmake-2.6.4-5.el5.2 **=> had to install 2.8.12.2** |
+=== ciclad-ng ===
+|  /etc/redhat-release  | Scientific Linux release 6.5 (Carbon) |
+|  uname -a  | Linux ciclad-ng.private.ipsl.fr 2.6.32-431.11.2.el6.x86_64\\ #1 SMP Tue Mar 25 11:15:18 CDT 2014 x86_64 x86_64 x86_64 GNU/Linux |
+|  gcc  | gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) |
+|  gfortran  | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) |
+|  g++  | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) |
+|  Qt  | qt-4.6.2-26.el6_4.x86_64 **=> had to install 4.8.5** |
+|  cmake  | cmake-2.6.4-5.el6.x86_64 **=> had to install 2.8.12.2** |
+=== VirtualBox FC20 ===
+|  /etc/redhat-release  | Fedora release 20 (Heisenbug) |
+|  uname -a  | Linux lsce3017.extra.cea.fr 3.13.10-200.fc20.x86_64\\ #1 SMP Mon Apr 14 20:34:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux |
+|  gcc  | gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) |
+|  gfortran  | GNU Fortran (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) |
+|  g++  | g++ (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) |
+|  Qt  | qt-4.8.5-15.fc20.x86_64 |
+|  cmake  | cmake-2.8.12.2-2.fc20.x86_64 |
+==== Disk space ====
+The following disk space was required for the installation
+^  Machine  ^  -A-\\ \\ cmake compile\\ (1)  ^  -B-\\ \\ cmake install  ^  -C-\\ \\ qt compile\\ (1)  ^  -D-\\ \\ qt install  ^  -E-\\ \\ cdat src\\ (2?)  ^  -F-\\ \\ cdat build\\ (2)  ^  -G-\\ \\ cdat install\\ (2)  ^  -H-\\ \\ Externals\\  (3)\\  Sub-dir of install  ^  -I-\\ \\ Installation\\ space\\  (4)  ^  -J-\\ \\ Final\\ space\\ (5)  ^
+|  LSCE  |  230M  |  69M  |  1.6G  |  451M  |  407M  |  3.2G  |  1.1G  |  372M  |  5.21G  |  1.54G  |
+|  ciclad  |  ?  |  66M  |  ?  |  455M  |  407M  |  2.8G\\ FAILED :-(  |  390M\\ FAILED :-(  |  176M\\ FAILED :-(  |  :-(  |  :-(  |
+|  ciclad-ng  |  ?  |  69M  |  ?  |  449M  |  407M  |  3.1G  |  1.1G  |  366M  |  5.10G  |  1.54G  |
+|  VirtualBox\\ FC20  |  0 (6)  |  0 (6)  |  0 (6)  |  0 (6)  |  407M  |  3.6G  |  1.2G  |  325M  |  5.20G  |  1.2G  |
+Notes:
+  * (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat)
+  * (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space
+  * (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile
+  * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
+  * (5) Sum of the columns, if we erase the B/E/F directories: D + G
+  * (6) We used the version available on the system (that was enough up-to-date)
@@ Line 16: / Line 366: @@
 cdat_multi configuration version: 09
+Check the installation details of [[other:uvcdat:installed#section151|1.5.1]] above. Installation tests of 1.5.0 were stopped as soon as 1.5.1 was available
 ^  Machine  ^  Config  ^  Notes  ^
 | LSCE | LSCE_09 | |
-===== ??? =====
+===== 1.1.0 =====
 Official details : n/a
@@ Line 26: / Line 378: @@
 cdat_multi configuration version: 08
-^  Machine  ^  Config  ^  Notes  ^
+^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
-| LSCE | LSCE_08 | |
+| LSCE | LSCE_08 | 2.7.3, Nov 13 2012 | |
-| TGCC | curie_08 | |
+| TGCC | curie_08 | 2.7.3, Oct 29 2012 | The only CDAT available @ TGCC\\ as of April 2014 |
+===== 6.0.0.alpha =====
+Official details : n/a
+cdat_multi configuration version: 02
+^  Machine  ^  Config  ^  Python/date  ^  Notes  ^
+| ciclad | ciclad_02 | 2.7.1, Aug 12 2011 | |
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