• UV-CDAT @ github
• UV-CDAT issues @ github

Official details :

cdat_multi configuration version: 13

              --- WARNING ---

2 Packages reported as FAILED, see logs

                contrib/pyclimate
                contrib/MSU

In a new installation, test #343 (diags_test_01) will fail the first time ctest is called because the test data in the UVCMETRICS_TEST_DATA_DIRECTORY directory is not available

99% tests passed, 1 tests failed out of 343

Total Test time (real) = 478.10 sec

The following tests FAILED:
        343 - diags_test_01 (Failed)
Errors while running CTest

If you run ctest -D Experimental, the test data is downloaded and all tests pass!

100% tests passed, 0 tests failed out of 343

Total Test time (real) = 697.55 sec

ccmake -D GIT_PROTOCOL=git:// -DCDAT_BUILD_MODE=DEFAULT -DCDAT_BUILD_CMOR=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL   -D CDAT_BUILD_BASEMAP=ON -D CDAT_BUILD_MATPLOTLIB=ON -D CDAT_BUILD_SCIENTIFICPYTHON=ON -D CDAT_BUILD_SCIKITS=ON -D CDAT_BUILD_SHAPELY=ON -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON -D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON   $CDAT_MAIN_DIR

Note: we have not explicitly requested to turn on the testing, because it is supposed to be ON by default

We have used -D GIT_PROTOCOL=git://. See the 1.5.1 options for more details

We want to get most of the useful stuff. Check Install from source command line options for more details

-DCDAT_BUILD_MODE=DEFAULT

We need to experiment with CMOR…

-DCDAT_BUILD_CMOR=ON

-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data

The content of this directory is required for ctest Test #343: diags_test_01 to pass. Strangely, it is only downloaded when you run ctest -D Experimental, so ctest (without -D Experimental) fails test #343 the first time…

We have tried to use the system's installed libxml2 and libxslt libraries by using the following options:

-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON

Unfortunately, uvcdat still compiles the new version of the libraries, and then the system's cmake gets confused and we get lots of warning messages of the following kind each time cmake is called. See issue 444 for more details

cmake --version
cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
cmake version 2.8.12.2

• During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in issue 983
  
  Solution: uncomment the #define GLX_GLXEXT_LEGACY line in build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx and restart the compilation

• After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/Makefile error described in CMOR issue 14
  
  Solution: indent lines 156 and 157 with a Tab instead of 8 spaces in build/build/cmor/Makefile and restart the compilation

The following disk space was required for the installation

Notes:

• (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat)
• (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space
• (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile
• (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
• (5) Sum of the columns, if we erase the B/E/F directories: D + G
• (6) We used the version available on the system (that was enough up-to-date)

Official details :

cdat_multi configuration version: 12

Official details : 2.0.beta

cdat_multi configuration version: 11

2 Packages reported as FAILED, see logs

                contrib/pyclimate
                contrib/MSU

53% tests passed, 35 tests failed out of 74

Total Test time (real) = 1020.63 sec

The following tests FAILED:
          2 - cdms_test (Failed)
          3 - cdms_verify (Failed)
          4 - cdms_load_and_plot_axis_variable (Failed)
          5 - run_uvcdat_gui_tests (Failed)
          6 - test177_regrid_mask (Failed)
          8 - testDoutriaux (Failed)
          9 - testMarvel (Failed)
         10 - testUnits (Failed)
         11 - testRaynaud (Failed)
         12 - testDateline (Failed)
         14 - testDiag (Failed)
         15 - testSo2TasACCESSFails (Failed)
         16 - testSo2Tas (Failed)
         17 - testWrite (Failed)
         18 - testMvCdmsRegrid (Failed)
         21 - testConserv (Failed)
         22 - testEsmfVsLibcf (Failed)
         23 - testEsmfInterface1 (Failed)
         28 - testTasRegrid (Failed)
         30 - testRegrid2 (Failed)
         34 - testEsmf_3x4_6x8_Conserve_Masked (Failed)
         36 - testMvGenericRegrid (Failed)
         37 - testSalinity (Failed)
         38 - testEsmfSalinity (Failed)
         39 - testEsmf (Failed)
         40 - testBergman (Failed)
         41 - testDistSrc (Failed)
         43 - vcs_verify_import (Failed)
         44 - vcs_verify_init (Failed)
         45 - vcs_verify_boxfill_basics (Failed)
         46 - vcs_verify_proj_basics (Failed)
         47 - vcs_verify_fillarea_basics (Failed)
         66 - CDMS_Test_17 (Failed)
         68 - CDMS_Test_multiple_formats (Failed)
         74 - diags_test_01 (Failed)

ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR

Same as for 1.5.1

Same as for 1.5.1

The following disk space was required for the installation

Web site: http://docs.python-requests.org/en/latest/

Install: pip install requests

Official details : 1.5.1

cdat_multi configuration version: 10

The default backend for matplotlib (Agg) could not be used for interactive graphics and we had to manually update the content of the default matplotlibrc

<INSTALL>/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc

#backend      : Agg
backend      : Qt4Agg

3 Packages reported as FAILED, see logs

                contrib/pyclimate
                contrib/MSU
                contrib/windspharm

89% tests passed, 8 tests failed out of 71

The following tests FAILED:
          1 - run_uvcdat (Failed)
          2 - cdms_test (Failed)
          3 - cdms_verify (Failed)
          4 - cdms_load_and_plot_axis_variable (Failed)
          5 - run_uvcdat_gui_tests (Failed)
         44 - vcs_test_anim_basic (Failed)
         64 - CDMS_Test_18 (Failed)
         66 - CDMS_Test_multiple_formats (Failed)
Errors while running CTest

ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CDAT_BUILD_PARAVIEW=OFF -D CDAT_BUILD_GUI=OFF -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR

If you want to test UV-CDAT with 'ctest' after the build, it must be installed with -D BUILD_TESTING=ON (which seems to be defined by default so we have not added it explicitly to the ccmake options)

It's better to specify explicitly the git protocol to use for downloading submodules in $CDAT_MAINDIR/contrib (-D GIT_PROTOCOL=git:// for all the machines we used), otherwise ccmake gets stuck in a long guru meditation when it's waiting/trying to download external sources.

In order to determine which protocol to use, go to a temporary directory and check by hand which protocol is working. If nothing happens (seems to hang and you have to interrupt with CTRL-C), it's NOT working:

• git clone http://github.com/UV-CDAT/scimake.git
• git clone git://github.com/UV-CDAT/scimake.git

IF “git clone git” fails, THEN specify '-D GIT_PROTOCOL=http://', otherwise specify '-D GIT_PROTOCOL=git://'

WARNING! WARNING! Check the git protocol overrides remaining from previous CDAT installations with git config –global -l, in remove some lines in ~/.gitconfig if need be…

We have used -D CDAT_BUILD_PARALLEL=OFF in order to disable parallelism and avoid potential mpi-related problems

We have used the following options in order to use the xml2/xslt libraries preinstalled on the system and avoid potential compilation problems. As of version 1.5.1, uv-cdat can compile libxml2 if the one available on the system is too old, but the rest of the installation still picks up the old system xml2 library

-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON

We have to disable the GUI in 1.5.0-1, with -D CDAT_BUILD_GUI=OFF. Otherwise ccmake does not work due to vistrails related problems

Paraview can't be installed, due to R include files not found. Disabling the GUI with -D CDAT_BUILD_GUI=OFF is not enough, so we have to disable it with -D CDAT_BUILD_PARAVIEW=OFF. We then have a problem with pixman being built before freetype so we have to add that pixman depends on freetype

in src/CMake/cdat_modules/pixman_deps.cmake:

set(pixman_deps ${pkgconfig_pkg} ${zlib_pkg})

⇒ set(pixman_deps ${pkgconfig_pkg} ${zlib_pkg} ${freetype_pkg})

The following disk space was required for the installation

Machine	-A- cmake compile (1)	-B- cmake install	-C- qt compile (1)	-D- qt install	-E- cdat src (2?)	-F- cdat build (2)	-G- cdat install (2)	-H- Externals (3) Sub-dir of install	-I- Installation space (4)	-J- Final space (5)
LSCE	230M	69M	1.6G	451M	407M	3.2G	1.1G	372M	5.21G	1.54G
ciclad	?	66M	?	455M	407M	2.8G FAILED	390M FAILED	176M FAILED
ciclad-ng	?	69M	?	449M	407M	3.1G	1.1G	366M	5.10G	1.54G
VirtualBox FC20	0 (6)	0 (6)	0 (6)	0 (6)	407M	3.6G	1.2G	325M	5.20G	1.2G

Notes:

• (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat)
• (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space
• (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile
• (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
• (5) Sum of the columns, if we erase the B/E/F directories: D + G
• (6) We used the version available on the system (that was enough up-to-date)

Official details : n/a

cdat_multi configuration version: 09

Check the installation details of 1.5.1 above. Installation tests of 1.5.0 were stopped as soon as 1.5.1 was available

Official details : n/a

cdat_multi configuration version: 08

Official details : n/a

cdat_multi configuration version: 02

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