other:uvcdat:installed
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other:uvcdat:installed [2014/04/23 15:28] – jypeter | other:uvcdat:installed [2015/06/08 14:31] – [Disk space] Added more data to the table jypeter | ||
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* [[https:// | * [[https:// | ||
* [[https:// | * [[https:// | ||
+ | |||
+ | ===== 2.1.0 ===== | ||
+ | |||
+ | Official details : | ||
+ | |||
+ | cdat_multi configuration version: 13 | ||
+ | |||
+ | ==== Available configurations ==== | ||
+ | |||
+ | ^ Machine | ||
+ | | LSCE | LSCE_13 | ||
+ | | ciclad | ||
+ | | VirtualBox\\ FC20 | VB_13 | 2.7.8, Feb 2 2015 | **Fedora release 20 (Heisenbug)**\\ Used system' | ||
+ | |||
+ | ==== Log files ==== | ||
+ | |||
+ | ^ Machine | ||
+ | | LSCE | {{: | ||
+ | | ciclad | {{: | ||
+ | | VirtualBox\\ FC20 | {{: | ||
+ | |||
+ | === make summary === | ||
+ | |||
+ | < | ||
+ | --- WARNING --- | ||
+ | |||
+ | 2 Packages reported as FAILED, see logs | ||
+ | |||
+ | contrib/ | ||
+ | contrib/MSU | ||
+ | </ | ||
+ | |||
+ | |||
+ | === ctest summary === | ||
+ | |||
+ | In a new installation, | ||
+ | |||
+ | < | ||
+ | 99% tests passed, 1 tests failed out of 343 | ||
+ | |||
+ | Total Test time (real) = 478.10 sec | ||
+ | |||
+ | The following tests FAILED: | ||
+ | 343 - diags_test_01 (Failed) | ||
+ | Errors while running CTest | ||
+ | </ | ||
+ | |||
+ | If you run **ctest -D Experimental**, | ||
+ | |||
+ | < | ||
+ | 100% tests passed, 0 tests failed out of 343 | ||
+ | |||
+ | Total Test time (real) = 697.55 sec | ||
+ | </ | ||
+ | |||
+ | ==== ccmake options ==== | ||
+ | |||
+ | |||
+ | < | ||
+ | ccmake -D GIT_PROTOCOL=git:// | ||
+ | </ | ||
+ | |||
+ | === BUILD_TESTING === | ||
+ | |||
+ | Note: we have **not** explicitly requested to turn on the testing, because it is supposed to be //ON// by default | ||
+ | |||
+ | === GIT_PROTOCOL === | ||
+ | |||
+ | We have used **-D GIT_PROTOCOL=git: | ||
+ | |||
+ | === CDAT_BUILD_MODE === | ||
+ | |||
+ | We want to get //most of the useful stuff//. Check [[https:// | ||
+ | |||
+ | **-DCDAT_BUILD_MODE=DEFAULT** | ||
+ | |||
+ | === CDAT_BUILD_CMOR === | ||
+ | |||
+ | We need to experiment with CMOR... | ||
+ | |||
+ | **-DCDAT_BUILD_CMOR=ON** | ||
+ | |||
+ | === Misc options === | ||
+ | |||
+ | ^ What do we want? ^ ccmake option | ||
+ | | basemap | -D CDAT_BUILD_BASEMAP=ON | | ||
+ | | matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON | | ||
+ | | scientificpython | -D CDAT_BUILD_SCIENTIFICPYTHON=ON | | ||
+ | | sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON | | ||
+ | | shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON | | ||
+ | | ipython notebook\\ some users may want to play with that | -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON | | ||
+ | |||
+ | === UVCMETRICS_TEST_DATA_DIRECTORY === | ||
+ | |||
+ | **-D UVCMETRICS_TEST_DATA_DIRECTORY=/< | ||
+ | |||
+ | The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**, | ||
+ | |||
+ | === LIBXML2 & LIBXSLT === | ||
+ | |||
+ | We have tried to use the system' | ||
+ | |||
+ | **-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON** | ||
+ | |||
+ | Unfortunately, | ||
+ | |||
+ | < | ||
+ | cmake --version | ||
+ | cmake: / | ||
+ | cmake: / | ||
+ | cmake: / | ||
+ | cmake: / | ||
+ | cmake version 2.8.12.2 | ||
+ | </ | ||
+ | |||
+ | ==== System specific notes ==== | ||
+ | |||
+ | === VB_13 installation === | ||
+ | |||
+ | * During the compilation, | ||
+ | |||
+ | * After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/ | ||
+ | |||
+ | ==== Disk space ==== | ||
+ | |||
+ | The following disk space was required for the installation | ||
+ | |||
+ | ^ Machine | ||
+ | | LSCE | 0 (6) | 0 (6) | 1.6G | 451M | | | | | | | | ||
+ | | ciclad | ||
+ | | VirtualBox\\ FC20 | 0 (6) | 0 (6) | 0 (6) | 0 (6) | 565M | 5.0G | 1.7G | 511M | 7.3 | 1.7 | | ||
+ | |||
+ | Notes: | ||
+ | * (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat) | ||
+ | * (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space | ||
+ | * (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile | ||
+ | * (4) Sum of the columns, if we erase the A/C directories: | ||
+ | * (5) Sum of the columns, if we erase the B/E/F directories: | ||
+ | * (6) We used the version available on the system (that was enough up-to-date) | ||
+ | |||
+ | |||
+ | |||
+ | ===== 2.0.0 ===== | ||
+ | |||
+ | Official details : | ||
+ | |||
+ | cdat_multi configuration version: 12 | ||
+ | |||
+ | ===== 2.0.beta ===== | ||
+ | |||
+ | Official details : [[https:// | ||
+ | |||
+ | cdat_multi configuration version: 11 | ||
+ | |||
+ | ==== Available configurations ==== | ||
+ | |||
+ | ^ Machine | ||
+ | | LSCE | LSCE_11 | ||
+ | | ciclad | ciclad_11-ng | ||
+ | |||
+ | ==== Log files ==== | ||
+ | |||
+ | ^ Machine | ||
+ | | LSCE | {{: | ||
+ | | ciclad-ng | ||
+ | |||
+ | === make summary === | ||
+ | |||
+ | < | ||
+ | 2 Packages reported as FAILED, see logs | ||
+ | |||
+ | contrib/ | ||
+ | contrib/MSU | ||
+ | </ | ||
+ | |||
+ | |||
+ | === ctest summary === | ||
+ | |||
+ | < | ||
+ | 53% tests passed, 35 tests failed out of 74 | ||
+ | |||
+ | Total Test time (real) = 1020.63 sec | ||
+ | |||
+ | The following tests FAILED: | ||
+ | 2 - cdms_test (Failed) | ||
+ | 3 - cdms_verify (Failed) | ||
+ | 4 - cdms_load_and_plot_axis_variable (Failed) | ||
+ | 5 - run_uvcdat_gui_tests (Failed) | ||
+ | 6 - test177_regrid_mask (Failed) | ||
+ | 8 - testDoutriaux (Failed) | ||
+ | 9 - testMarvel (Failed) | ||
+ | 10 - testUnits (Failed) | ||
+ | 11 - testRaynaud (Failed) | ||
+ | 12 - testDateline (Failed) | ||
+ | 14 - testDiag (Failed) | ||
+ | 15 - testSo2TasACCESSFails (Failed) | ||
+ | 16 - testSo2Tas (Failed) | ||
+ | 17 - testWrite (Failed) | ||
+ | 18 - testMvCdmsRegrid (Failed) | ||
+ | 21 - testConserv (Failed) | ||
+ | 22 - testEsmfVsLibcf (Failed) | ||
+ | 23 - testEsmfInterface1 (Failed) | ||
+ | 28 - testTasRegrid (Failed) | ||
+ | 30 - testRegrid2 (Failed) | ||
+ | 34 - testEsmf_3x4_6x8_Conserve_Masked (Failed) | ||
+ | 36 - testMvGenericRegrid (Failed) | ||
+ | 37 - testSalinity (Failed) | ||
+ | 38 - testEsmfSalinity (Failed) | ||
+ | 39 - testEsmf (Failed) | ||
+ | 40 - testBergman (Failed) | ||
+ | 41 - testDistSrc (Failed) | ||
+ | 43 - vcs_verify_import (Failed) | ||
+ | 44 - vcs_verify_init (Failed) | ||
+ | 45 - vcs_verify_boxfill_basics (Failed) | ||
+ | 46 - vcs_verify_proj_basics (Failed) | ||
+ | 47 - vcs_verify_fillarea_basics (Failed) | ||
+ | 66 - CDMS_Test_17 (Failed) | ||
+ | 68 - CDMS_Test_multiple_formats (Failed) | ||
+ | 74 - diags_test_01 (Failed) | ||
+ | </ | ||
+ | |||
+ | ==== ccmake options ==== | ||
+ | |||
+ | |||
+ | < | ||
+ | ccmake -D GIT_PROTOCOL=git:// | ||
+ | </ | ||
+ | |||
+ | ==== Installation environment ==== | ||
+ | |||
+ | === LSCE === | ||
+ | |||
+ | Same as for 1.5.1 | ||
+ | |||
+ | === ciclad-ng === | ||
+ | |||
+ | Same as for 1.5.1 | ||
+ | |||
+ | === VirtualBox FC20 === | ||
+ | |||
+ | ==== Disk space ==== | ||
+ | |||
+ | The following disk space was required for the installation | ||
+ | |||
+ | ==== Extra packages installed ==== | ||
+ | |||
+ | === Requests: HTTP for Humans === | ||
+ | |||
+ | Web site: http:// | ||
+ | |||
+ | Install: '' | ||
+ | |||
===== 1.5.1 ===== | ===== 1.5.1 ===== | ||
Line 14: | Line 266: | ||
cdat_multi configuration version: 10 | cdat_multi configuration version: 10 | ||
+ | |||
+ | ==== Special warning ==== | ||
+ | |||
+ | The default backend for matplotlib (Agg) could not be used for interactive graphics and we had to manually update the content of the default matplotlibrc | ||
+ | |||
+ | < | ||
+ | < | ||
+ | |||
+ | # | ||
+ | backend | ||
+ | </ | ||
+ | |||
+ | ==== Available configurations ==== | ||
^ Machine | ^ Machine | ||
- | | LSCE | LSCE_10 | + | | LSCE | LSCE_10 |
- | | ciclad | ciclad_10 | + | | ciclad |
- | | ciclad-ng | ciclad_10-ng | + | | ciclad-ng |
- | | VirtualBox FC20 | VB_10 | | | + | | VirtualBox\\ FC20 | VB_10 | | |
+ | |||
+ | ==== Log files ==== | ||
+ | |||
+ | ^ Machine | ||
+ | | LSCE | {{: | ||
+ | | ciclad | ||
+ | | ciclad-ng | ||
+ | | VirtualBox\\ FC20 | {{: | ||
+ | |||
+ | === make summary === | ||
+ | |||
+ | < | ||
+ | 3 Packages reported as FAILED, see logs | ||
+ | |||
+ | contrib/ | ||
+ | contrib/ | ||
+ | contrib/ | ||
+ | </ | ||
+ | |||
+ | === ctest summary === | ||
+ | |||
+ | < | ||
+ | 89% tests passed, 8 tests failed out of 71 | ||
+ | |||
+ | The following tests FAILED: | ||
+ | 1 - run_uvcdat (Failed) | ||
+ | 2 - cdms_test (Failed) | ||
+ | 3 - cdms_verify (Failed) | ||
+ | 4 - cdms_load_and_plot_axis_variable (Failed) | ||
+ | 5 - run_uvcdat_gui_tests (Failed) | ||
+ | 44 - vcs_test_anim_basic (Failed) | ||
+ | 64 - CDMS_Test_18 (Failed) | ||
+ | 66 - CDMS_Test_multiple_formats (Failed) | ||
+ | Errors while running CTest | ||
+ | |||
+ | </ | ||
==== ccmake options ==== | ==== ccmake options ==== | ||
Line 28: | Line 329: | ||
</ | </ | ||
- | ==== Paraview problem ==== | + | === BUILD_TESTING |
- | Paraview can't be installed, due to R include files not found. Disabling the GUI with '' | + | If you want to test UV-CDAT with ' |
+ | |||
+ | === GIT_PROTOCOL === | ||
+ | |||
+ | It's better to specify explicitly the git protocol to use for downloading submodules in $CDAT_MAINDIR/ | ||
+ | |||
+ | In order to determine which protocol to use, go to a temporary directory and check by hand which protocol is working. If nothing happens (seems to hang and you have to interrupt with CTRL-C), it's NOT working: | ||
+ | |||
+ | * git clone http: | ||
+ | * git clone git: | ||
+ | |||
+ | IF "git clone git" fails, THEN specify '-D GIT_PROTOCOL=http: | ||
+ | |||
+ | WARNING! WARNING! Check the git protocol overrides remaining from previous CDAT installations with **git config --global -l**, in remove some lines in ~/ | ||
+ | |||
+ | === CDAT_BUILD_PARALLEL === | ||
+ | |||
+ | We have used **-D CDAT_BUILD_PARALLEL=OFF** in order to disable parallelism and avoid potential mpi-related problems | ||
+ | |||
+ | <note warning> | ||
+ | |||
+ | === LIBXML2 & LIBXSLT === | ||
+ | |||
+ | We have used the following options in order to use the xml2/xslt libraries preinstalled on the system and avoid potential compilation problems. As of version 1.5.1, uv-cdat can compile libxml2 if the one available on the system is too old, but the rest of the installation still picks up the old system xml2 library :-( | ||
+ | |||
+ | **-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON** | ||
+ | |||
+ | === CDAT_BUILD_GUI === | ||
+ | |||
+ | We have to disable the GUI in 1.5.0-1, with **-D CDAT_BUILD_GUI=OFF**. Otherwise ccmake does not work due to vistrails related problems :-( | ||
+ | |||
+ | === CDAT_BUILD_PARAVIEW === | ||
+ | |||
+ | Paraview can't be installed, due to R include files not found. Disabling the GUI with '' | ||
'' | '' | ||
Line 47: | Line 381: | ||
| gfortran | | gfortran | ||
| g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | | g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | ||
- | | Qt | qt-4.6.2-28.el6_5.x86_64 => had to install 4.8.5 | | + | | Qt | qt-4.6.2-28.el6_5.x86_64 |
- | | cmake | cmake-2.6.4-5.el6.x86_64 => had to install 2.8.12.2 | | + | | cmake | cmake-2.6.4-5.el6.x86_64 |
Line 55: | Line 389: | ||
| / | | / | ||
| uname -a | Linux ciclad1.ipsl.jussieu.fr 2.6.18-348.4.1.el5\\ #1 SMP Tue Apr 16 15:40:06 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux | | | uname -a | Linux ciclad1.ipsl.jussieu.fr 2.6.18-348.4.1.el5\\ #1 SMP Tue Apr 16 15:40:06 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux | | ||
- | | gcc44 | gcc44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | | + | | |
- | | gfortran44 | + | | |
- | | g++44 | g++44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | | + | | |
- | | Qt | qt4-4.7.4-0 => had to install 4.8.5 | | + | | Qt | qt4-4.7.4-0 |
- | | cmake | cmake-2.6.4-5.el5.2 => had to install 2.8.12.2 | | + | | cmake | cmake-2.6.4-5.el5.2 |
Line 69: | Line 403: | ||
| gfortran | | gfortran | ||
| g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | | g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | ||
- | | Qt | qt-4.6.2-26.el6_4.x86_64 => had to install 4.8.5 | | + | | Qt | qt-4.6.2-26.el6_4.x86_64 |
- | | cmake | cmake-2.6.4-5.el6.x86_64 => had to install 2.8.12.2 | | + | | cmake | cmake-2.6.4-5.el6.x86_64 |
+ | |||
+ | |||
+ | === VirtualBox FC20 === | ||
+ | |||
+ | | / | ||
+ | | uname -a | Linux lsce3017.extra.cea.fr 3.13.10-200.fc20.x86_64\\ #1 SMP Mon Apr 14 20:34:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux | | ||
+ | | gcc | gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | | ||
+ | | gfortran | ||
+ | | g++ | g++ (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | | ||
+ | | Qt | qt-4.8.5-15.fc20.x86_64 | | ||
+ | | cmake | cmake-2.8.12.2-2.fc20.x86_64 | ||
+ | ==== Disk space ==== | ||
- | === VirtualBox === | + | The following disk space was required for the installation |
- | | /etc/redhat-release | + | ^ Machine |
- | | | + | | |
- | | | + | | |
- | | | + | | |
- | | | + | | |
- | | | + | |
- | | | + | |
+ | Notes: | ||
+ | * (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat) | ||
+ | * (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space | ||
+ | * (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile | ||
+ | * (4) Sum of the columns, if we erase the A/C directories: | ||
+ | * (5) Sum of the columns, if we erase the B/E/F directories: | ||
+ | * (6) We used the version available on the system (that was enough up-to-date) | ||
other/uvcdat/installed.txt · Last modified: 2017/04/04 10:30 by jypeter