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other:uvcdat:installed [2014/04/24 08:26] jypeter Updated the required disk space info |
other:uvcdat:installed [2015/02/04 17:08] jypeter |
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* [[https://github.com/UV-CDAT/uvcdat|UV-CDAT @ github]] | * [[https://github.com/UV-CDAT/uvcdat|UV-CDAT @ github]] | ||
* [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]] | * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]] | ||
+ | |||
+ | ===== 2.1.0 ===== | ||
+ | |||
+ | Official details : | ||
+ | |||
+ | cdat_multi configuration version: 13 | ||
+ | |||
+ | ==== Available configurations ==== | ||
+ | |||
+ | ^ Machine ^ Config ^ Python/date ^ Notes ^ | ||
+ | | LSCE | LSCE_13 | 2.7.8, Jan 22 2015 | **Red Hat Enterprise Linux Server release 6.6 (Santiago)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 | | ||
+ | | ciclad | ciclad_13 | | **Scientific Linux release 6.6 (Carbon)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 | | ||
+ | | VirtualBox\\ FC20 | VB_13 | | **Fedora release 20 (Heisenbug)**\\ Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) | | ||
+ | |||
+ | ==== Log files ==== | ||
+ | |||
+ | ^ Machine ^ make ^ ctest ^ | ||
+ | | LSCE | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} | | ||
+ | | VirtualBox\\ FC20 | {{:other:|txt}} | {{:other:|txt}} | | ||
+ | |||
+ | === make summary === | ||
+ | |||
+ | <code> | ||
+ | --- WARNING --- | ||
+ | |||
+ | 2 Packages reported as FAILED, see logs | ||
+ | |||
+ | contrib/pyclimate | ||
+ | contrib/MSU | ||
+ | </code> | ||
+ | |||
+ | |||
+ | === ctest summary === | ||
+ | |||
+ | In a new installation, test #343 (//diags_test_01//) will **fail** the first time **ctest** is called because the test data in the **UVCMETRICS_TEST_DATA_DIRECTORY** directory is not available | ||
+ | |||
+ | <code> | ||
+ | 99% tests passed, 1 tests failed out of 343 | ||
+ | |||
+ | Total Test time (real) = 478.10 sec | ||
+ | |||
+ | The following tests FAILED: | ||
+ | 343 - diags_test_01 (Failed) | ||
+ | Errors while running CTest | ||
+ | </code> | ||
+ | |||
+ | If you run **ctest -D Experimental**, the test data is downloaded and all tests pass! | ||
+ | |||
+ | <code> | ||
+ | 100% tests passed, 0 tests failed out of 343 | ||
+ | |||
+ | Total Test time (real) = 697.55 sec | ||
+ | </code> | ||
+ | |||
+ | ==== ccmake options ==== | ||
+ | |||
+ | |||
+ | <code> | ||
+ | ccmake -D GIT_PROTOCOL=git:// -DCDAT_BUILD_MODE=DEFAULT -DCDAT_BUILD_CMOR=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL -D CDAT_BUILD_BASEMAP=ON -D CDAT_BUILD_MATPLOTLIB=ON -D CDAT_BUILD_SCIENTIFICPYTHON=ON -D CDAT_BUILD_SCIKITS=ON -D CDAT_BUILD_SHAPELY=ON -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON -D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON $CDAT_MAIN_DIR | ||
+ | </code> | ||
+ | |||
+ | === BUILD_TESTING === | ||
+ | |||
+ | Note: we have **not** explicitly requested to turn on the testing, because it is supposed to be //ON// by default | ||
+ | |||
+ | === GIT_PROTOCOL === | ||
+ | |||
+ | We have used **-D GIT_PROTOCOL=git:%%//%%**. See the [[#section151|1.5.1 options]] for more details | ||
+ | |||
+ | === CDAT_BUILD_MODE === | ||
+ | |||
+ | We want to get //most of the useful stuff//. Check [[https://github.com/UV-CDAT/uvcdat/wiki/Install-from-source-command-line-options|Install from source command line options]] for more details | ||
+ | |||
+ | **-DCDAT_BUILD_MODE=DEFAULT** | ||
+ | |||
+ | === CDAT_BUILD_CMOR === | ||
+ | |||
+ | We need to experiment with CMOR... | ||
+ | |||
+ | **-DCDAT_BUILD_CMOR=ON** | ||
+ | |||
+ | === Misc options === | ||
+ | |||
+ | ^ What do we want? ^ ccmake option ^ | ||
+ | | basemap | -D CDAT_BUILD_BASEMAP=ON | | ||
+ | | matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON | | ||
+ | | scientificpython | -D CDAT_BUILD_SCIENTIFICPYTHON=ON | | ||
+ | | sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON | | ||
+ | | shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON | | ||
+ | | ipython notebook\\ some users may want to play with that | -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON | | ||
+ | |||
+ | === UVCMETRICS_TEST_DATA_DIRECTORY === | ||
+ | |||
+ | **-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data** | ||
+ | |||
+ | The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**, so **ctest** (without //-D Experimental//) fails test #343 the first time... | ||
+ | |||
+ | === LIBXML2 & LIBXSLT === | ||
+ | |||
+ | We have tried to use the system's installed //libxml2// and //libxslt// libraries by using the following options: | ||
+ | |||
+ | **-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON** | ||
+ | |||
+ | Unfortunately, uvcdat still compiles the new version of the libraries, and then the system's cmake gets confused and we get **lots** of warning messages of the following kind each time cmake is called. See [[https://github.com/UV-CDAT/uvcdat/issues/444|issue 444]] for more details | ||
+ | |||
+ | <code> | ||
+ | cmake --version | ||
+ | cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2) | ||
+ | cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2) | ||
+ | cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2) | ||
+ | cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2) | ||
+ | cmake version 2.8.12.2 | ||
+ | </code> | ||
+ | |||
+ | ==== System specific notes ==== | ||
+ | |||
+ | === VB_13 installation === | ||
+ | |||
+ | * During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in [[https://github.com/UV-CDAT/uvcdat/issues/983|issue 983]]\\ \\ Solution: uncomment the **#define GLX_GLXEXT_LEGACY** line in //build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx// and restart the compilation | ||
+ | |||
+ | * After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/Makefile error described in [[https://github.com/PCMDI/cmor/issues/14|CMOR issue 14]]\\ \\ Solution: indent lines 156 and 157 with a **Tab** instead of 8 spaces in build/build/cmor/Makefile and restart the compilation | ||
+ | |||
+ | ===== 2.0.0 ===== | ||
+ | |||
+ | Official details : | ||
+ | |||
+ | cdat_multi configuration version: 12 | ||
+ | |||
+ | ===== 2.0.beta ===== | ||
+ | |||
+ | Official details : [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release#release-planned-july-2014|2.0.beta]] | ||
+ | |||
+ | cdat_multi configuration version: 11 | ||
+ | |||
+ | ==== Available configurations ==== | ||
+ | |||
+ | ^ Machine ^ Config ^ Python/date ^ Notes ^ | ||
+ | | LSCE | LSCE_11 | 2.7.7, Aug 1 2014 | Used the same recompiled cmake and Qt as for 1.5.1 | | ||
+ | | ciclad | ciclad_11-ng | 2.7.7, Aug 4 2014 | Used the same recompiled cmake and Qt as for 1.5.1 | | ||
+ | |||
+ | ==== Log files ==== | ||
+ | |||
+ | ^ Machine ^ make ^ ctest ^ | ||
+ | | LSCE | {{:other:uvcdat:lsce_cdat_make_uv-2.0.beta_x86_64_gcc4_20140801_1801.txt|txt}} | {{:other:uvcdat:lsce_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140804_1209.txt|txt}} | | ||
+ | | ciclad-ng | {{:other:uvcdat:ciclad-ng_cdat_make_uv-2.0.beta_x86_64_gcc4_20140804_1725.txt|txt}} | {{:other:uvcdat:ciclad-ng_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140805_1017.txt|txt}} | | ||
+ | |||
+ | === make summary === | ||
+ | |||
+ | <code> | ||
+ | 2 Packages reported as FAILED, see logs | ||
+ | |||
+ | contrib/pyclimate | ||
+ | contrib/MSU | ||
+ | </code> | ||
+ | |||
+ | |||
+ | === ctest summary === | ||
+ | |||
+ | <code> | ||
+ | 53% tests passed, 35 tests failed out of 74 | ||
+ | |||
+ | Total Test time (real) = 1020.63 sec | ||
+ | |||
+ | The following tests FAILED: | ||
+ | 2 - cdms_test (Failed) | ||
+ | 3 - cdms_verify (Failed) | ||
+ | 4 - cdms_load_and_plot_axis_variable (Failed) | ||
+ | 5 - run_uvcdat_gui_tests (Failed) | ||
+ | 6 - test177_regrid_mask (Failed) | ||
+ | 8 - testDoutriaux (Failed) | ||
+ | 9 - testMarvel (Failed) | ||
+ | 10 - testUnits (Failed) | ||
+ | 11 - testRaynaud (Failed) | ||
+ | 12 - testDateline (Failed) | ||
+ | 14 - testDiag (Failed) | ||
+ | 15 - testSo2TasACCESSFails (Failed) | ||
+ | 16 - testSo2Tas (Failed) | ||
+ | 17 - testWrite (Failed) | ||
+ | 18 - testMvCdmsRegrid (Failed) | ||
+ | 21 - testConserv (Failed) | ||
+ | 22 - testEsmfVsLibcf (Failed) | ||
+ | 23 - testEsmfInterface1 (Failed) | ||
+ | 28 - testTasRegrid (Failed) | ||
+ | 30 - testRegrid2 (Failed) | ||
+ | 34 - testEsmf_3x4_6x8_Conserve_Masked (Failed) | ||
+ | 36 - testMvGenericRegrid (Failed) | ||
+ | 37 - testSalinity (Failed) | ||
+ | 38 - testEsmfSalinity (Failed) | ||
+ | 39 - testEsmf (Failed) | ||
+ | 40 - testBergman (Failed) | ||
+ | 41 - testDistSrc (Failed) | ||
+ | 43 - vcs_verify_import (Failed) | ||
+ | 44 - vcs_verify_init (Failed) | ||
+ | 45 - vcs_verify_boxfill_basics (Failed) | ||
+ | 46 - vcs_verify_proj_basics (Failed) | ||
+ | 47 - vcs_verify_fillarea_basics (Failed) | ||
+ | 66 - CDMS_Test_17 (Failed) | ||
+ | 68 - CDMS_Test_multiple_formats (Failed) | ||
+ | 74 - diags_test_01 (Failed) | ||
+ | </code> | ||
+ | |||
+ | ==== ccmake options ==== | ||
+ | |||
+ | |||
+ | <code> | ||
+ | ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR | ||
+ | </code> | ||
+ | |||
+ | ==== Installation environment ==== | ||
+ | |||
+ | === LSCE === | ||
+ | |||
+ | Same as for 1.5.1 | ||
+ | |||
+ | === ciclad-ng === | ||
+ | |||
+ | Same as for 1.5.1 | ||
+ | |||
+ | === VirtualBox FC20 === | ||
+ | |||
+ | ==== Disk space ==== | ||
+ | |||
+ | The following disk space was required for the installation | ||
+ | |||
+ | ==== Extra packages installed ==== | ||
+ | |||
+ | === Requests: HTTP for Humans === | ||
+ | |||
+ | Web site: http://docs.python-requests.org/en/latest/ | ||
+ | |||
+ | Install: ''pip install requests'' | ||
+ | |||
===== 1.5.1 ===== | ===== 1.5.1 ===== | ||
Line 14: | Line 246: | ||
cdat_multi configuration version: 10 | cdat_multi configuration version: 10 | ||
+ | |||
+ | ==== Special warning ==== | ||
+ | |||
+ | The default backend for matplotlib (Agg) could not be used for interactive graphics and we had to manually update the content of the default matplotlibrc | ||
+ | |||
+ | <code> | ||
+ | <INSTALL>/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc | ||
+ | |||
+ | #backend : Agg | ||
+ | backend : Qt4Agg | ||
+ | </code> | ||
==== Available configurations ==== | ==== Available configurations ==== | ||
^ Machine ^ Config ^ Python/date ^ Notes ^ | ^ Machine ^ Config ^ Python/date ^ Notes ^ | ||
- | | LSCE | LSCE_10 | 2.7.4, Apr 23 2014 | | | + | | LSCE | LSCE_10 | 2.7.4, Apr 23 2014 | Had to use recompiled\\ cmake (2.8.12.2) and Qt (4.8.5)\\ because the system ones\\ were too old| |
| ciclad | ciclad_10 | **FAILED**\\ :-( | Linux too old,\\ even when specifying recent\\ gcc44/gfortran44/g++44 compilers,\\ we end up with too many problems, ... :-( | | | ciclad | ciclad_10 | **FAILED**\\ :-( | Linux too old,\\ even when specifying recent\\ gcc44/gfortran44/g++44 compilers,\\ we end up with too many problems, ... :-( | | ||
- | | ciclad-ng | ciclad_10-ng | 2.7.4, Apr 22 2014 | | | + | | ciclad-ng | ciclad_10-ng | 2.7.4, Apr 22 2014 | Had to use recompiled\\ cmake (2.8.12.2) and Qt (4.8.5)\\ because the system ones\\ were too old | |
| VirtualBox\\ FC20 | VB_10 | | | | VirtualBox\\ FC20 | VB_10 | | | ||
Line 29: | Line 272: | ||
| ciclad | :-( | :-( | | | ciclad | :-( | :-( | | ||
| ciclad-ng | {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140422_1445.txt|txt}} | {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140422_1541.txt|txt}} | | | ciclad-ng | {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140422_1445.txt|txt}} | {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140422_1541.txt|txt}} | | ||
- | | VirtualBox\\ FC20 | | | | + | | VirtualBox\\ FC20 | {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_vb_20140427_2220.txt|txt}} | {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_vb_20140427_2352.txt|txt}} | |
=== make summary === | === make summary === | ||
Line 118: | Line 361: | ||
| gfortran | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | | gfortran | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | ||
| g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | | g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | ||
- | | Qt | qt-4.6.2-28.el6_5.x86_64 => had to install 4.8.5 | | + | | Qt | qt-4.6.2-28.el6_5.x86_64 **=> had to install 4.8.5** | |
- | | cmake | cmake-2.6.4-5.el6.x86_64 => had to install 2.8.12.2 | | + | | cmake | cmake-2.6.4-5.el6.x86_64 **=> had to install 2.8.12.2** | |
Line 126: | Line 369: | ||
| /etc/redhat-release | CentOS release 5.2 (Final) | | | /etc/redhat-release | CentOS release 5.2 (Final) | | ||
| uname -a | Linux ciclad1.ipsl.jussieu.fr 2.6.18-348.4.1.el5\\ #1 SMP Tue Apr 16 15:40:06 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux | | | uname -a | Linux ciclad1.ipsl.jussieu.fr 2.6.18-348.4.1.el5\\ #1 SMP Tue Apr 16 15:40:06 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux | | ||
- | | gcc44 | gcc44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | | + | | **gcc44** | gcc44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | |
- | | gfortran44 | GNU Fortran (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | | + | | **gfortran44** | GNU Fortran (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | |
- | | g++44 | g++44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | | + | | **g++44** | g++44 (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) | |
- | | Qt | qt4-4.7.4-0 => had to install 4.8.5 | | + | | Qt | qt4-4.7.4-0 **=> had to install 4.8.5** | |
- | | cmake | cmake-2.6.4-5.el5.2 => had to install 2.8.12.2 | | + | | cmake | cmake-2.6.4-5.el5.2 **=> had to install 2.8.12.2** | |
Line 140: | Line 383: | ||
| gfortran | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | | gfortran | GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | ||
| g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | | g++ | g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) | | ||
- | | Qt | qt-4.6.2-26.el6_4.x86_64 => had to install 4.8.5 | | + | | Qt | qt-4.6.2-26.el6_4.x86_64 **=> had to install 4.8.5** | |
- | | cmake | cmake-2.6.4-5.el6.x86_64 => had to install 2.8.12.2 | | + | | cmake | cmake-2.6.4-5.el6.x86_64 **=> had to install 2.8.12.2** | |
- | === VirtualBox === | + | === VirtualBox FC20 === |
- | | /etc/redhat-release | | | + | | /etc/redhat-release | Fedora release 20 (Heisenbug) | |
- | | uname -a | | | + | | uname -a | Linux lsce3017.extra.cea.fr 3.13.10-200.fc20.x86_64\\ #1 SMP Mon Apr 14 20:34:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux | |
- | | gcc | | | + | | gcc | gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | |
- | | gfortran | | | + | | gfortran | GNU Fortran (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | |
- | | g++ | | | + | | g++ | g++ (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | |
- | | Qt | | | + | | Qt | qt-4.8.5-15.fc20.x86_64 | |
- | | cmake | | | + | | cmake | cmake-2.8.12.2-2.fc20.x86_64 | |
==== Disk space ==== | ==== Disk space ==== | ||
Line 162: | Line 405: | ||
| ciclad | ? | 66M | ? | 455M | 407M | 2.8G\\ FAILED :-( | 390M\\ FAILED :-( | 176M\\ FAILED :-( | :-( | :-( | | | ciclad | ? | 66M | ? | 455M | 407M | 2.8G\\ FAILED :-( | 390M\\ FAILED :-( | 176M\\ FAILED :-( | :-( | :-( | | ||
| ciclad-ng | ? | 69M | ? | 449M | 407M | 3.1G | 1.1G | 366M | 5.10G | 1.54G | | | ciclad-ng | ? | 69M | ? | 449M | 407M | 3.1G | 1.1G | 366M | 5.10G | 1.54G | | ||
- | | VirtualBox\\ FC20 | | | | | | | | | | + | | VirtualBox\\ FC20 | 0 (6) | 0 (6) | 0 (6) | 0 (6) | 407M | 3.6G | 1.2G | 325M | 5.20G | 1.2G | |
Notes: | Notes: | ||
Line 170: | Line 413: | ||
* (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G | * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G | ||
* (5) Sum of the columns, if we erase the B/E/F directories: D + G | * (5) Sum of the columns, if we erase the B/E/F directories: D + G | ||
+ | * (6) We used the version available on the system (that was enough up-to-date) | ||