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other:uvcdat:installed [2014/04/24 14:27] – [Installation environment] Used bold for non-standard stuff jypeterother:uvcdat:installed [2015/02/05 17:45] – jypeter
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   * [[https://github.com/UV-CDAT/uvcdat|UV-CDAT @ github]]   * [[https://github.com/UV-CDAT/uvcdat|UV-CDAT @ github]]
   * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]]   * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]]
 +
 +===== 2.1.0 =====
 +
 +Official details : 
 +
 +cdat_multi configuration version: 13
 +
 +==== Available configurations ====
 +
 +^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
 +|  LSCE  |  LSCE_13  |  2.7.8, Jan 22 2015  | **Red Hat Enterprise Linux Server release 6.6 (Santiago)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
 +|  ciclad  |  ciclad_13  |  2.7.8, Feb  5 2015  | **Scientific Linux release 6.6 (Carbon)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
 +|  VirtualBox\\ FC20  |  VB_13  |  2.7.8, Feb  2 2015  | **Fedora release 20 (Heisenbug)**\\ Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) |
 +
 +==== Log files ====
 +
 +^  Machine  ^  make  ^  ctest  ^
 +|  LSCE  | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
 +|  ciclad | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
 +|  VirtualBox\\ FC20  | {{:other:|txt}} | {{:other:|txt}} |
 +
 +=== make summary ===
 +
 +<code>
 +              --- WARNING ---
 +
 +2 Packages reported as FAILED, see logs
 +
 +                contrib/pyclimate
 +                contrib/MSU
 +</code>
 +
 +
 +=== ctest summary ===
 +
 +In a new installation, test #343 (//diags_test_01//) will **fail** the first time **ctest** is called because the test data in the **UVCMETRICS_TEST_DATA_DIRECTORY** directory is not available
 +
 +<code>
 +99% tests passed, 1 tests failed out of 343
 +
 +Total Test time (real) = 478.10 sec
 +
 +The following tests FAILED:
 +        343 - diags_test_01 (Failed)
 +Errors while running CTest
 +</code>
 +
 +If you run **ctest -D Experimental**, the test data is downloaded and all tests pass!
 +
 +<code>
 +100% tests passed, 0 tests failed out of 343
 +
 +Total Test time (real) = 697.55 sec
 +</code>
 +
 +==== ccmake options ====
 +
 +
 +<code>
 +ccmake -D GIT_PROTOCOL=git:// -DCDAT_BUILD_MODE=DEFAULT -DCDAT_BUILD_CMOR=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL   -D CDAT_BUILD_BASEMAP=ON -D CDAT_BUILD_MATPLOTLIB=ON -D CDAT_BUILD_SCIENTIFICPYTHON=ON -D CDAT_BUILD_SCIKITS=ON -D CDAT_BUILD_SHAPELY=ON -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON -D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON   $CDAT_MAIN_DIR
 +</code>
 +
 +=== BUILD_TESTING ===
 +
 +Note: we have **not** explicitly requested to turn on the testing, because it is supposed to be //ON// by default
 +
 +=== GIT_PROTOCOL ===
 +
 +We have used **-D GIT_PROTOCOL=git:%%//%%**. See the [[#section151|1.5.1 options]] for more details
 +
 +=== CDAT_BUILD_MODE ===
 +
 +We want to get //most of the useful stuff//. Check [[https://github.com/UV-CDAT/uvcdat/wiki/Install-from-source-command-line-options|Install from source command line options]] for more details
 +
 +**-DCDAT_BUILD_MODE=DEFAULT**
 +
 +=== CDAT_BUILD_CMOR ===
 +
 +We need to experiment with CMOR...
 +
 +**-DCDAT_BUILD_CMOR=ON**
 +
 +=== Misc options ===
 +
 +^  What do we want?  ^  ccmake option  ^
 +| basemap | -D CDAT_BUILD_BASEMAP=ON |
 +| matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON |
 +| scientificpython | -D CDAT_BUILD_SCIENTIFICPYTHON=ON |
 +| sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON |
 +| shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON |
 +| ipython notebook\\ some users may want to play with that | -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON |
 +
 +=== UVCMETRICS_TEST_DATA_DIRECTORY ===
 +
 +**-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data**
 +
 +The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**, so **ctest** (without //-D Experimental//) fails test #343 the first time... 
 +
 +=== LIBXML2 & LIBXSLT ===
 +
 +We have tried to use the system's installed //libxml2// and //libxslt// libraries by using the following options:
 +
 +**-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON**
 +
 +Unfortunately, uvcdat still compiles the new version of the libraries, and then the system's cmake gets confused and we get **lots** of warning messages of the following kind each time cmake is called. See [[https://github.com/UV-CDAT/uvcdat/issues/444|issue 444]] for more details
 +
 +<code>
 +cmake --version
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake version 2.8.12.2
 +</code>
 +
 +==== System specific notes ====
 +
 +=== VB_13 installation ===
 +
 +  * During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in [[https://github.com/UV-CDAT/uvcdat/issues/983|issue 983]]\\ \\ Solution: uncomment the **#define GLX_GLXEXT_LEGACY** line in //build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx// and restart the compilation
 +
 +  * After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/Makefile error described in [[https://github.com/PCMDI/cmor/issues/14|CMOR issue 14]]\\ \\ Solution: indent lines 156 and 157 with a **Tab** instead of 8 spaces in build/build/cmor/Makefile and restart the compilation
 +
 +===== 2.0.0 =====
 +
 +Official details : 
 +
 +cdat_multi configuration version: 12
 +
 +===== 2.0.beta =====
 +
 +Official details : [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release#release-planned-july-2014|2.0.beta]]
 +
 +cdat_multi configuration version: 11
 +
 +==== Available configurations ====
 +
 +^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
 +|  LSCE  |  LSCE_11  |  2.7.7, Aug  1 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
 +|  ciclad |  ciclad_11-ng  |  2.7.7, Aug  4 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
 +
 +==== Log files ====
 +
 +^  Machine  ^  make  ^  ctest  ^
 +|  LSCE  | {{:other:uvcdat:lsce_cdat_make_uv-2.0.beta_x86_64_gcc4_20140801_1801.txt|txt}} | {{:other:uvcdat:lsce_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140804_1209.txt|txt}} |
 +|  ciclad-ng  | {{:other:uvcdat:ciclad-ng_cdat_make_uv-2.0.beta_x86_64_gcc4_20140804_1725.txt|txt}} | {{:other:uvcdat:ciclad-ng_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140805_1017.txt|txt}} |
 +
 +=== make summary ===
 +
 +<code>
 +2 Packages reported as FAILED, see logs
 +
 +                contrib/pyclimate
 +                contrib/MSU
 +</code>
 +
 +
 +=== ctest summary ===
 +
 +<code>
 +53% tests passed, 35 tests failed out of 74
 +
 +Total Test time (real) = 1020.63 sec
 +
 +The following tests FAILED:
 +          2 - cdms_test (Failed)
 +          3 - cdms_verify (Failed)
 +          4 - cdms_load_and_plot_axis_variable (Failed)
 +          5 - run_uvcdat_gui_tests (Failed)
 +          6 - test177_regrid_mask (Failed)
 +          8 - testDoutriaux (Failed)
 +          9 - testMarvel (Failed)
 +         10 - testUnits (Failed)
 +         11 - testRaynaud (Failed)
 +         12 - testDateline (Failed)
 +         14 - testDiag (Failed)
 +         15 - testSo2TasACCESSFails (Failed)
 +         16 - testSo2Tas (Failed)
 +         17 - testWrite (Failed)
 +         18 - testMvCdmsRegrid (Failed)
 +         21 - testConserv (Failed)
 +         22 - testEsmfVsLibcf (Failed)
 +         23 - testEsmfInterface1 (Failed)
 +         28 - testTasRegrid (Failed)
 +         30 - testRegrid2 (Failed)
 +         34 - testEsmf_3x4_6x8_Conserve_Masked (Failed)
 +         36 - testMvGenericRegrid (Failed)
 +         37 - testSalinity (Failed)
 +         38 - testEsmfSalinity (Failed)
 +         39 - testEsmf (Failed)
 +         40 - testBergman (Failed)
 +         41 - testDistSrc (Failed)
 +         43 - vcs_verify_import (Failed)
 +         44 - vcs_verify_init (Failed)
 +         45 - vcs_verify_boxfill_basics (Failed)
 +         46 - vcs_verify_proj_basics (Failed)
 +         47 - vcs_verify_fillarea_basics (Failed)
 +         66 - CDMS_Test_17 (Failed)
 +         68 - CDMS_Test_multiple_formats (Failed)
 +         74 - diags_test_01 (Failed)
 +</code>
 +
 +==== ccmake options ====
 +
 +
 +<code>
 +ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR
 +</code>
 +
 +==== Installation environment ====
 +
 +=== LSCE ===
 +
 +Same as for 1.5.1
 +
 +=== ciclad-ng ===
 +
 +Same as for 1.5.1
 +
 +=== VirtualBox FC20 ===
 +
 +==== Disk space ====
 +
 +The following disk space was required for the installation
 +
 +==== Extra packages installed ====
 +
 +=== Requests: HTTP for Humans ===
 +
 +Web site: http://docs.python-requests.org/en/latest/
 +
 +Install: ''pip install requests''
 +
  
 ===== 1.5.1 ===== ===== 1.5.1 =====
Line 14: Line 247:
  
 cdat_multi configuration version: 10 cdat_multi configuration version: 10
 +
 +==== Special warning ====
 +
 +The default backend for matplotlib (Agg) could not be used for interactive graphics and we had to manually update the content of the default matplotlibrc
 +
 +<code>
 +<INSTALL>/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc
 +
 +#backend      : Agg
 +backend      : Qt4Agg
 +</code>
  
 ==== Available configurations ==== ==== Available configurations ====
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 |  ciclad  |  :-(  |  :-(  | |  ciclad  |  :-(  |  :-(  |
 |  ciclad-ng  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140422_1445.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140422_1541.txt|txt}}  | |  ciclad-ng  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140422_1445.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140422_1541.txt|txt}}  |
-|  VirtualBox\\ FC20  |    |    |+|  VirtualBox\\ FC20  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_vb_20140427_2220.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_vb_20140427_2352.txt|txt}}  |
  
 === make summary === === make summary ===
Line 144: Line 388:
  
  
-=== VirtualBox ===+=== VirtualBox FC20 ===
  
-|  /etc/redhat-release  |  | +|  /etc/redhat-release  | Fedora release 20 (Heisenbug) | 
-|  uname -a  |  | +|  uname -a  | Linux lsce3017.extra.cea.fr 3.13.10-200.fc20.x86_64\\ #1 SMP Mon Apr 14 20:34:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux | 
-|  gcc  |  | +|  gcc  | gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | 
-|  gfortran  |  | +|  gfortran  | GNU Fortran (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | 
-|  g++  |  | +|  g++  | g++ (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) | 
-|  Qt  |  | +|  Qt  | qt-4.8.5-15.fc20.x86_64 | 
-|  cmake  |  |+|  cmake  | cmake-2.8.12.2-2.fc20.x86_64 |
  
 ==== Disk space ==== ==== Disk space ====
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 |  ciclad  |  ?  |  66M  |  ?  |  455M  |  407M  |  2.8G\\ FAILED :-(  |  390M\\ FAILED :-(  |  176M\\ FAILED :-(  |  :-(  |  :-(  | |  ciclad  |  ?  |  66M  |  ?  |  455M  |  407M  |  2.8G\\ FAILED :-(  |  390M\\ FAILED :-(  |  176M\\ FAILED :-(  |  :-(  |  :-(  |
 |  ciclad-ng  |  ?  |  69M  |  ?  |  449M  |  407M  |  3.1G  |  1.1G  |  366M  |  5.10G  |  1.54G  | |  ciclad-ng  |  ?  |  69M  |  ?  |  449M  |  407M  |  3.1G  |  1.1G  |  366M  |  5.10G  |  1.54G  |
-|  VirtualBox\\ FC20  |    |    |    |    |    |    |    |    |+|  VirtualBox\\ FC20  |  0 (6)  |  0 (6)  |  0 (6)  |  0 (6)  |  407M  |  3.6G  |  1.2G  |  325M  |  5.20G  |  1.2G  |
  
 Notes: Notes:
Line 170: Line 414:
   * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G   * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
   * (5) Sum of the columns, if we erase the B/E/F directories: D + G   * (5) Sum of the columns, if we erase the B/E/F directories: D + G
 +  * (6) We used the version available on the system (that was enough up-to-date)
  
  
other/uvcdat/installed.txt · Last modified: 2017/04/04 10:30 by jypeter
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