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--- other:uvcdat:installed [2014/04/24 12:27]
jypeter [Installation environment] Used bold for non-standard stuff
+++ other:uvcdat:installed [2017/02/27 15:37]
pmip3adm ↷ Links adapted because of a move operation
@@ Line 1: / Line 1: @@
 ====== UV-CDAT versions installed by JYP ======
-<note tip>
-[[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]]</note>
+<WRAP center round important 60%>
+This page describes versions of UV-CDAT installed by JYP, up to 2.1.0
+For more recent versions, 2.8.0 and later, check the [[.cdat_conda:index|UV-CDAT conda versions installed by JYP]] page
+</WRAP>
+<WRAP center round tip 60%>
+[[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]]
+</WRAP>
 ===== Useful links =====
@@ Line 8: / Line 17: @@
   * [[https://github.com/UV-CDAT/uvcdat|UV-CDAT @ github]]
   * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]]
+===== 2.1.0 =====
+Official details :
+cdat_multi configuration version: 13
+==== Available configurations ====
+^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
+|  LSCE  |  LSCE_13  |  2.7.8, Jan 22 2015  | **Red Hat Enterprise Linux Server release 6.6 (Santiago)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
+|  ciclad  |  ciclad_13  |  2.7.8, Feb  5 2015  | **Scientific Linux release 6.6 (Carbon)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
+|  VirtualBox\\ FC20  |  VB_13  |  2.7.8, Feb  2 2015  | **Fedora release 20 (Heisenbug)**\\ Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) |
+==== Log files ====
+^  Machine  ^  make  ^  ctest  ^
+|  LSCE  | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
+|  ciclad | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
+|  VirtualBox\\ FC20  | {{:other:|txt}} | {{:other:|txt}} |
+=== make summary ===
+<code>
+              --- WARNING ---
+Packages reported as FAILED, see logs
+                contrib/pyclimate
+                contrib/MSU
+</code>
+=== ctest summary ===
+In a new installation, test #343 (//diags_test_01//) will **fail** the first time **ctest** is called because the test data in the **UVCMETRICS_TEST_DATA_DIRECTORY** directory is not available
+<code>
+% tests passed, 1 tests failed out of 343
+Total Test time (real) = 478.10 sec
+The following tests FAILED:
+- diags_test_01 (Failed)
+Errors while running CTest
+</code>
+If you run **ctest -D Experimental**, the test data is downloaded and all tests pass!
+<code>
+% tests passed, 0 tests failed out of 343
+Total Test time (real) = 697.55 sec
+</code>
+==== ccmake options ====
+<code>
+ccmake -D GIT_PROTOCOL=git:// -DCDAT_BUILD_MODE=DEFAULT -DCDAT_BUILD_CMOR=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL   -D CDAT_BUILD_BASEMAP=ON -D CDAT_BUILD_MATPLOTLIB=ON -D CDAT_BUILD_SCIENTIFICPYTHON=ON -D CDAT_BUILD_SCIKITS=ON -D CDAT_BUILD_SHAPELY=ON -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON -D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON   $CDAT_MAIN_DIR
+</code>
+=== BUILD_TESTING ===
+Note: we have **not** explicitly requested to turn on the testing, because it is supposed to be //ON// by default
+=== GIT_PROTOCOL ===
+We have used **-D GIT_PROTOCOL=git:%%//%%**. See the [[#section151|1.5.1 options]] for more details
+=== CDAT_BUILD_MODE ===
+We want to get //most of the useful stuff//. Check [[https://github.com/UV-CDAT/uvcdat/wiki/Install-from-source-command-line-options|Install from source command line options]] for more details
+**-DCDAT_BUILD_MODE=DEFAULT**
+=== CDAT_BUILD_CMOR ===
+We need to experiment with CMOR...
+**-DCDAT_BUILD_CMOR=ON**
+=== Misc options ===
+^  What do we want?  ^  ccmake option  ^
+| basemap | -D CDAT_BUILD_BASEMAP=ON |
+| matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON |
+| [[http://dirac.cnrs-orleans.fr/plone/software/scientificpython/|scientificpython]] | -D CDAT_BUILD_SCIENTIFICPYTHON=ON |
+| sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON |
+| shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON |
+| ipython notebook\\ some users may want to play with that | -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON |
+=== UVCMETRICS_TEST_DATA_DIRECTORY ===
+**-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data**
+The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**, so **ctest** (without //-D Experimental//) fails test #343 the first time...
+=== LIBXML2 & LIBXSLT ===
+We have tried to use the system's installed //libxml2// and //libxslt// libraries by using the following options:
+**-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON**
+Unfortunately, uvcdat still compiles the new version of the libraries, and then the system's cmake gets confused and we get **lots** of warning messages of the following kind each time cmake is called. See [[https://github.com/UV-CDAT/uvcdat/issues/444|issue 444]] for more details
+<code>
+cmake --version
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
+cmake version 2.8.12.2
+</code>
+==== System specific notes ====
+=== VB_13 installation ===
+  * During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in [[https://github.com/UV-CDAT/uvcdat/issues/983|issue 983]]\\ \\ Solution: uncomment the **#define GLX_GLXEXT_LEGACY** line in //build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx// and restart the compilation
+  * After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/Makefile error described in [[https://github.com/PCMDI/cmor/issues/14|CMOR issue 14]]\\ \\ Solution: indent lines 156 and 157 with a **Tab** instead of 8 spaces in build/build/cmor/Makefile and restart the compilation
+==== Disk space ====
+The following disk space was required for the installation
+^  Machine  ^  -A-\\ \\ cmake compile\\ (1)  ^  -B-\\ \\ cmake install  ^  -C-\\ \\ qt compile\\ (1)  ^  -D-\\ \\ qt install  ^  -E-\\ \\ cdat src\\ (2?)  ^  -F-\\ \\ cdat build\\ (2)  ^  -G-\\ \\ cdat install\\ (2)  ^  -H-\\ \\ Externals\\  (3)\\  Sub-dir of install  ^  -I-\\ \\ Installation\\ space\\  (4)  ^  -J-\\ \\ Final\\ space\\ (5)  ^
+|  LSCE  |  0 (6)  |  0 (6)  |  1.6G  |  451M  |    |    |    |    |    |    |
+|  ciclad  |  0 (6)  |  0 (6)  |  ?  |  455M  |  578M  |  4.7G  |  1.6G  |  545M  |  7.3  |  2.0  |
+|  VirtualBox\\ FC20  |  0 (6)  |  0 (6)  |  0 (6)  |  0 (6)  |  565M  |  5.0G  |  1.7G  |  511M  |  7.3  |  1.7  |
+Notes:
+  * (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat)
+  * (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space
+  * (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile
+  * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
+  * (5) Sum of the columns, if we erase the B/E/F directories: D + G
+  * (6) We used the version available on the system (that was enough up-to-date)
+===== 2.0.0 =====
+Official details :
+cdat_multi configuration version: 12
+===== 2.0.beta =====
+Official details : [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release#release-planned-july-2014|2.0.beta]]
+cdat_multi configuration version: 11
+==== Available configurations ====
+^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
+|  LSCE  |  LSCE_11  |  2.7.7, Aug  1 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
+|  ciclad |  ciclad_11-ng  |  2.7.7, Aug  4 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
+==== Log files ====
+^  Machine  ^  make  ^  ctest  ^
+|  LSCE  | {{:other:uvcdat:lsce_cdat_make_uv-2.0.beta_x86_64_gcc4_20140801_1801.txt|txt}} | {{:other:uvcdat:lsce_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140804_1209.txt|txt}} |
+|  ciclad-ng  | {{:other:uvcdat:ciclad-ng_cdat_make_uv-2.0.beta_x86_64_gcc4_20140804_1725.txt|txt}} | {{:other:uvcdat:ciclad-ng_cdat_ctest_uv-2.0.beta_x86_64_gcc4_20140805_1017.txt|txt}} |
+=== make summary ===
+<code>
+Packages reported as FAILED, see logs
+                contrib/pyclimate
+                contrib/MSU
+</code>
+=== ctest summary ===
+<code>
+% tests passed, 35 tests failed out of 74
+Total Test time (real) = 1020.63 sec
+The following tests FAILED:
+- cdms_test (Failed)
+- cdms_verify (Failed)
+- cdms_load_and_plot_axis_variable (Failed)
+- run_uvcdat_gui_tests (Failed)
+- test177_regrid_mask (Failed)
+- testDoutriaux (Failed)
+- testMarvel (Failed)
+- testUnits (Failed)
+- testRaynaud (Failed)
+- testDateline (Failed)
+- testDiag (Failed)
+- testSo2TasACCESSFails (Failed)
+- testSo2Tas (Failed)
+- testWrite (Failed)
+- testMvCdmsRegrid (Failed)
+- testConserv (Failed)
+- testEsmfVsLibcf (Failed)
+- testEsmfInterface1 (Failed)
+- testTasRegrid (Failed)
+- testRegrid2 (Failed)
+- testEsmf_3x4_6x8_Conserve_Masked (Failed)
+- testMvGenericRegrid (Failed)
+- testSalinity (Failed)
+- testEsmfSalinity (Failed)
+- testEsmf (Failed)
+- testBergman (Failed)
+- testDistSrc (Failed)
+- vcs_verify_import (Failed)
+- vcs_verify_init (Failed)
+- vcs_verify_boxfill_basics (Failed)
+- vcs_verify_proj_basics (Failed)
+- vcs_verify_fillarea_basics (Failed)
+- CDMS_Test_17 (Failed)
+- CDMS_Test_multiple_formats (Failed)
+- diags_test_01 (Failed)
+</code>
+==== ccmake options ====
+<code>
+ccmake -D GIT_PROTOCOL=git:// -D CDAT_BUILD_PARALLEL=OFF -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL $CDAT_MAIN_DIR
+</code>
+==== Installation environment ====
+=== LSCE ===
+Same as for 1.5.1
+=== ciclad-ng ===
+Same as for 1.5.1
+=== VirtualBox FC20 ===
+==== Disk space ====
+The following disk space was required for the installation
+==== Extra packages installed ====
+=== Requests: HTTP for Humans ===
+Web site: http://docs.python-requests.org/en/latest/
+Install: ''pip install requests''
 ===== 1.5.1 =====
@@ Line 14: / Line 275: @@
 cdat_multi configuration version: 10
+==== Special warning ====
+The default backend for matplotlib (Agg) could not be used for interactive graphics and we had to manually update the content of the default matplotlibrc
+<code>
+<INSTALL>/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc
+#backend      : Agg
+backend      : Qt4Agg
+</code>
 ==== Available configurations ====
@@ Line 29: / Line 301: @@
 |  ciclad  |  :-(  |  :-(  |
 |  ciclad-ng  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_20140422_1445.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_20140422_1541.txt|txt}}  |
-|  VirtualBox\\ FC20  |    |    |
+|  VirtualBox\\ FC20  |  {{:other:uvcdat:cdat_make_uv-1.5.1_x86_64_gcc4_vb_20140427_2220.txt|txt}}  |  {{:other:uvcdat:cdat_ctest_uv-1.5.1_x86_64_gcc4_vb_20140427_2352.txt|txt}}  |
 === make summary ===
@@ Line 144: / Line 416: @@
-=== VirtualBox ===
+=== VirtualBox FC20 ===
-|  /etc/redhat-release  |  |
+|  /etc/redhat-release  | Fedora release 20 (Heisenbug) |
-|  uname -a  |  |
+|  uname -a  | Linux lsce3017.extra.cea.fr 3.13.10-200.fc20.x86_64\\ #1 SMP Mon Apr 14 20:34:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux |
-|  gcc  |  |
+|  gcc  | gcc (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) |
-|  gfortran  |  |
+|  gfortran  | GNU Fortran (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) |
-|  g++  |  |
+|  g++  | g++ (GCC) 4.8.2 20131212 (Red Hat 4.8.2-7) |
-|  Qt  |  |
+|  Qt  | qt-4.8.5-15.fc20.x86_64 |
-|  cmake  |  |
+|  cmake  | cmake-2.8.12.2-2.fc20.x86_64 |
 ==== Disk space ====
@@ Line 162: / Line 434: @@
 |  ciclad  |  ?  |  66M  |  ?  |  455M  |  407M  |  2.8G\\ FAILED :-(  |  390M\\ FAILED :-(  |  176M\\ FAILED :-(  |  :-(  |  :-(  |
 |  ciclad-ng  |  ?  |  69M  |  ?  |  449M  |  407M  |  3.1G  |  1.1G  |  366M  |  5.10G  |  1.54G  |
-|  VirtualBox\\ FC20  |    |    |    |    |    |    |    |    |
+|  VirtualBox\\ FC20  |  0 (6)  |  0 (6)  |  0 (6)  |  0 (6)  |  407M  |  3.6G  |  1.2G  |  325M  |  5.20G  |  1.2G  |
 Notes:
@@ Line 170: / Line 442: @@
   * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
   * (5) Sum of the columns, if we erase the B/E/F directories: D + G
+  * (6) We used the version available on the system (that was enough up-to-date)

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