other:uvcdat:installed
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other:uvcdat:installed [2015/02/02 16:29] jypeter |
other:uvcdat:installed [2017/04/04 08:30] (current) jypeter [UV-CDAT versions installed by JYP] Added link to "UV-CDAT Build 101" |
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| ====== UV-CDAT versions installed by JYP ====== | ====== UV-CDAT versions installed by JYP ====== | ||
| - | <note tip> | + | |
| - | [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]]</note> | + | <WRAP center round important 60%> |
| + | This page describes versions of UV-CDAT installed by JYP, up to 2.1.0 | ||
| + | |||
| + | For more recent versions, 2.8.0 and later, check the [[.cdat_conda:index|UV-CDAT conda versions installed by JYP]] page | ||
| + | </WRAP> | ||
| + | |||
| + | <WRAP center round tip 60%> | ||
| + | [[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]] | ||
| + | </WRAP> | ||
| + | |||
| + | <WRAP center round tip 60%> | ||
| + | Installation tutorial for UV-CDAT up to 2.4.0 | ||
| + | |||
| + | [[https://docs.google.com/presentation/d/1U8RSmzoIKfQlwrXeJUbFRZPXYv6yxr1OO82QyV1cz2s/edit#slide=id.p14|UV-CDAT Build 101]] | ||
| + | </WRAP> | ||
| + | |||
| ===== Useful links ===== | ===== Useful links ===== | ||
| Line 18: | Line 34: | ||
| ^ Machine ^ Config ^ Python/date ^ Notes ^ | ^ Machine ^ Config ^ Python/date ^ Notes ^ | ||
| - | | LSCE | LSCE_13 | 2.7.8, Jan 22 2015 | Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 | | + | | LSCE | LSCE_13 | 2.7.8, Jan 22 2015 | **Red Hat Enterprise Linux Server release 6.6 (Santiago)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 | |
| - | | VirtualBox\\ FC20 | VB_13 | | Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) | | + | | ciclad | ciclad_13 | 2.7.8, Feb 5 2015 | **Scientific Linux release 6.6 (Carbon)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 | |
| + | | VirtualBox\\ FC20 | VB_13 | 2.7.8, Feb 2 2015 | **Fedora release 20 (Heisenbug)**\\ Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) | | ||
| ==== Log files ==== | ==== Log files ==== | ||
| Line 25: | Line 42: | ||
| ^ Machine ^ make ^ ctest ^ | ^ Machine ^ make ^ ctest ^ | ||
| | LSCE | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} | | | LSCE | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} | | ||
| + | | ciclad | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} | | ||
| | VirtualBox\\ FC20 | {{:other:|txt}} | {{:other:|txt}} | | | VirtualBox\\ FC20 | {{:other:|txt}} | {{:other:|txt}} | | ||
| Line 30: | Line 48: | ||
| <code> | <code> | ||
| + | --- WARNING --- | ||
| + | 2 Packages reported as FAILED, see logs | ||
| + | |||
| + | contrib/pyclimate | ||
| + | contrib/MSU | ||
| </code> | </code> | ||
| === ctest summary === | === ctest summary === | ||
| + | |||
| + | In a new installation, test #343 (//diags_test_01//) will **fail** the first time **ctest** is called because the test data in the **UVCMETRICS_TEST_DATA_DIRECTORY** directory is not available | ||
| + | |||
| + | <code> | ||
| + | 99% tests passed, 1 tests failed out of 343 | ||
| + | |||
| + | Total Test time (real) = 478.10 sec | ||
| + | |||
| + | The following tests FAILED: | ||
| + | 343 - diags_test_01 (Failed) | ||
| + | Errors while running CTest | ||
| + | </code> | ||
| + | |||
| + | If you run **ctest -D Experimental**, the test data is downloaded and all tests pass! | ||
| <code> | <code> | ||
| + | 100% tests passed, 0 tests failed out of 343 | ||
| + | Total Test time (real) = 697.55 sec | ||
| </code> | </code> | ||
| Line 72: | Line 111: | ||
| | basemap | -D CDAT_BUILD_BASEMAP=ON | | | basemap | -D CDAT_BUILD_BASEMAP=ON | | ||
| | matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON | | | matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON | | ||
| - | | scientificpython | -D CDAT_BUILD_SCIENTIFICPYTHON=ON | | + | | [[http://dirac.cnrs-orleans.fr/plone/software/scientificpython/|scientificpython]] | -D CDAT_BUILD_SCIENTIFICPYTHON=ON | |
| | sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON | | | sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON | | ||
| | shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON | | | shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON | | ||
| Line 81: | Line 120: | ||
| **-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data** | **-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data** | ||
| - | The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**... | + | The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**, so **ctest** (without //-D Experimental//) fails test #343 the first time... |
| === LIBXML2 & LIBXSLT === | === LIBXML2 & LIBXSLT === | ||
| Line 98: | Line 137: | ||
| cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2) | cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2) | ||
| cmake version 2.8.12.2 | cmake version 2.8.12.2 | ||
| - | |||
| </code> | </code> | ||
| Line 105: | Line 143: | ||
| === VB_13 installation === | === VB_13 installation === | ||
| - | During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in [[https://github.com/UV-CDAT/uvcdat/issues/983|issue 983]] | + | * During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in [[https://github.com/UV-CDAT/uvcdat/issues/983|issue 983]]\\ \\ Solution: uncomment the **#define GLX_GLXEXT_LEGACY** line in //build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx// and restart the compilation |
| + | |||
| + | * After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/Makefile error described in [[https://github.com/PCMDI/cmor/issues/14|CMOR issue 14]]\\ \\ Solution: indent lines 156 and 157 with a **Tab** instead of 8 spaces in build/build/cmor/Makefile and restart the compilation | ||
| + | |||
| + | ==== Disk space ==== | ||
| + | |||
| + | The following disk space was required for the installation | ||
| + | |||
| + | ^ Machine ^ -A-\\ \\ cmake compile\\ (1) ^ -B-\\ \\ cmake install ^ -C-\\ \\ qt compile\\ (1) ^ -D-\\ \\ qt install ^ -E-\\ \\ cdat src\\ (2?) ^ -F-\\ \\ cdat build\\ (2) ^ -G-\\ \\ cdat install\\ (2) ^ -H-\\ \\ Externals\\ (3)\\ Sub-dir of install ^ -I-\\ \\ Installation\\ space\\ (4) ^ -J-\\ \\ Final\\ space\\ (5) ^ | ||
| + | | LSCE | 0 (6) | 0 (6) | 1.6G | 451M | | | | | | | | ||
| + | | ciclad | 0 (6) | 0 (6) | ? | 455M | 578M | 4.7G | 1.6G | 545M | 7.3 | 2.0 | | ||
| + | | VirtualBox\\ FC20 | 0 (6) | 0 (6) | 0 (6) | 0 (6) | 565M | 5.0G | 1.7G | 511M | 7.3 | 1.7 | | ||
| + | |||
| + | Notes: | ||
| + | * (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat) | ||
| + | * (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space | ||
| + | * (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile | ||
| + | * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G | ||
| + | * (5) Sum of the columns, if we erase the B/E/F directories: D + G | ||
| + | * (6) We used the version available on the system (that was enough up-to-date) | ||
| - | Solution: uncomment the **#define GLX_GLXEXT_LEGACY** line in //build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx// and restart the compilation | ||
| ===== 2.0.0 ===== | ===== 2.0.0 ===== | ||
other/uvcdat/installed.1422894549.txt.gz · Last modified: 2015/02/02 16:29 by jypeter
