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other:uvcdat:installed [2015/01/19 18:11] – jypeterother:uvcdat:installed [2017/04/04 10:30] (current) – [UV-CDAT versions installed by JYP] Added link to "UV-CDAT Build 101" jypeter
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 ====== UV-CDAT versions installed by JYP ====== ====== UV-CDAT versions installed by JYP ======
  
-<note tip> + 
-[[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]]</note>+<WRAP center round important 60%> 
 +This page describes versions of UV-CDAT installed by JYP, up to 2.1.0 
 + 
 +For more recent versions, 2.8.0 and later, check the [[.cdat_conda:index|UV-CDAT conda versions installed by JYP]] page 
 +</WRAP> 
 + 
 +<WRAP center round tip 60%> 
 +[[https://github.com/UV-CDAT/uvcdat/wiki/Roadmap-to-Release|Official list of available versions]] 
 +</WRAP> 
 + 
 +<WRAP center round tip 60%> 
 +Installation tutorial for UV-CDAT up to 2.4.0 
 + 
 +[[https://docs.google.com/presentation/d/1U8RSmzoIKfQlwrXeJUbFRZPXYv6yxr1OO82QyV1cz2s/edit#slide=id.p14|UV-CDAT Build 101]] 
 +</WRAP> 
 + 
  
 ===== Useful links ===== ===== Useful links =====
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   * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]]   * [[https://github.com/UV-CDAT/uvcdat/issues?state=open|UV-CDAT issues @ github]]
  
-===== 2.1 =====+===== 2.1.0 =====
  
 Official details :  Official details : 
  
 cdat_multi configuration version: 13 cdat_multi configuration version: 13
 +
 +==== Available configurations ====
 +
 +^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
 +|  LSCE  |  LSCE_13  |  2.7.8, Jan 22 2015  | **Red Hat Enterprise Linux Server release 6.6 (Santiago)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
 +|  ciclad  |  ciclad_13  |  2.7.8, Feb  5 2015  | **Scientific Linux release 6.6 (Carbon)**\\ Used system's cmake (2.8.12.2) and the same recompiled Qt (4.8.5) used for uv-cdat 1.5.1 |
 +|  VirtualBox\\ FC20  |  VB_13  |  2.7.8, Feb  2 2015  | **Fedora release 20 (Heisenbug)**\\ Used system's cmake (2.8.12.2) and Qt (4.8.6-18.fc20.x86_64) |
 +
 +==== Log files ====
 +
 +^  Machine  ^  make  ^  ctest  ^
 +|  LSCE  | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
 +|  ciclad | {{:other:uvcdat:|txt}} | {{:other:uvcdat:|txt}} |
 +|  VirtualBox\\ FC20  | {{:other:|txt}} | {{:other:|txt}} |
 +
 +=== make summary ===
 +
 +<code>
 +              --- WARNING ---
 +
 +2 Packages reported as FAILED, see logs
 +
 +                contrib/pyclimate
 +                contrib/MSU
 +</code>
 +
 +
 +=== ctest summary ===
 +
 +In a new installation, test #343 (//diags_test_01//) will **fail** the first time **ctest** is called because the test data in the **UVCMETRICS_TEST_DATA_DIRECTORY** directory is not available
 +
 +<code>
 +99% tests passed, 1 tests failed out of 343
 +
 +Total Test time (real) = 478.10 sec
 +
 +The following tests FAILED:
 +        343 - diags_test_01 (Failed)
 +Errors while running CTest
 +</code>
 +
 +If you run **ctest -D Experimental**, the test data is downloaded and all tests pass!
 +
 +<code>
 +100% tests passed, 0 tests failed out of 343
 +
 +Total Test time (real) = 697.55 sec
 +</code>
 +
 +==== ccmake options ====
 +
 +
 +<code>
 +ccmake -D GIT_PROTOCOL=git:// -DCDAT_BUILD_MODE=DEFAULT -DCDAT_BUILD_CMOR=ON -D CMAKE_INSTALL_PREFIX=$CDAT_INSTALL   -D CDAT_BUILD_BASEMAP=ON -D CDAT_BUILD_MATPLOTLIB=ON -D CDAT_BUILD_SCIENTIFICPYTHON=ON -D CDAT_BUILD_SCIKITS=ON -D CDAT_BUILD_SHAPELY=ON -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON -D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data -D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON   $CDAT_MAIN_DIR
 +</code>
 +
 +=== BUILD_TESTING ===
 +
 +Note: we have **not** explicitly requested to turn on the testing, because it is supposed to be //ON// by default
 +
 +=== GIT_PROTOCOL ===
 +
 +We have used **-D GIT_PROTOCOL=git:%%//%%**. See the [[#section151|1.5.1 options]] for more details
 +
 +=== CDAT_BUILD_MODE ===
 +
 +We want to get //most of the useful stuff//. Check [[https://github.com/UV-CDAT/uvcdat/wiki/Install-from-source-command-line-options|Install from source command line options]] for more details
 +
 +**-DCDAT_BUILD_MODE=DEFAULT**
 +
 +=== CDAT_BUILD_CMOR ===
 +
 +We need to experiment with CMOR...
 +
 +**-DCDAT_BUILD_CMOR=ON**
 +
 +=== Misc options ===
 +
 +^  What do we want?  ^  ccmake option  ^
 +| basemap | -D CDAT_BUILD_BASEMAP=ON |
 +| matplotlib | -D CDAT_BUILD_MATPLOTLIB=ON |
 +| [[http://dirac.cnrs-orleans.fr/plone/software/scientificpython/|scientificpython]] | -D CDAT_BUILD_SCIENTIFICPYTHON=ON |
 +| sckikits\\ if we want to experiment later with scikit image| -D CDAT_BUILD_SCIKITS=ON |
 +| shapely seems useful for dealing with data on irregular grids | -D CDAT_BUILD_SHAPELY=ON |
 +| ipython notebook\\ some users may want to play with that | -D CDAT_BUILD_JINJA2=ON -D CDAT_BUILD_PYGMENTS=ON -D CDAT_BUILD_PYZMQ=ON -D CDAT_BUILD_SPHINX=ON -D CDAT_BUILD_TORNADO=ON |
 +
 +=== UVCMETRICS_TEST_DATA_DIRECTORY ===
 +
 +**-D UVCMETRICS_TEST_DATA_DIRECTORY=/<some_scratch_directory>/uvcmetrics_test_data**
 +
 +The content of this directory is required for ctest **Test #343: diags_test_01** to pass. Strangely, it is only downloaded when you run **ctest -D Experimental**, so **ctest** (without //-D Experimental//) fails test #343 the first time... 
 +
 +=== LIBXML2 & LIBXSLT ===
 +
 +We have tried to use the system's installed //libxml2// and //libxslt// libraries by using the following options:
 +
 +**-D CDAT_BUILD_LIBXML2=OFF -D CDAT_USE_SYSTEM_LIBXML2=ON -D CDAT_BUILD_LIBXSLT=OFF -D CDAT_USE_SYSTEM_LIBXSLT=ON**
 +
 +Unfortunately, uvcdat still compiles the new version of the libraries, and then the system's cmake gets confused and we get **lots** of warning messages of the following kind each time cmake is called. See [[https://github.com/UV-CDAT/uvcdat/issues/444|issue 444]] for more details
 +
 +<code>
 +cmake --version
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake: /home/share/unix_files/cdat/versions/cdat_install_uv-2.1.0_x86_64_gcc4_13/Externals/lib/libxml2.so.2: no version information available (required by /usr/lib64/libarchive.so.2)
 +cmake version 2.8.12.2
 +</code>
 +
 +==== System specific notes ====
 +
 +=== VB_13 installation ===
 +
 +  * During the compilation, make fails because of the VTK/Mesa/OpenGL/FedoraCore20 related problem detailed in [[https://github.com/UV-CDAT/uvcdat/issues/983|issue 983]]\\ \\ Solution: uncomment the **#define GLX_GLXEXT_LEGACY** line in //build/build/VTK/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx// and restart the compilation
 +
 +  * After resuming the compilation with the above patch, the compilation fails because of a CMOR related make/Makefile error described in [[https://github.com/PCMDI/cmor/issues/14|CMOR issue 14]]\\ \\ Solution: indent lines 156 and 157 with a **Tab** instead of 8 spaces in build/build/cmor/Makefile and restart the compilation
 +
 +==== Disk space ====
 +
 +The following disk space was required for the installation
 +
 +^  Machine  ^  -A-\\ \\ cmake compile\\ (1)  ^  -B-\\ \\ cmake install  ^  -C-\\ \\ qt compile\\ (1)  ^  -D-\\ \\ qt install  ^  -E-\\ \\ cdat src\\ (2?)  ^  -F-\\ \\ cdat build\\ (2)  ^  -G-\\ \\ cdat install\\ (2)  ^  -H-\\ \\ Externals\\  (3)\\  Sub-dir of install  ^  -I-\\ \\ Installation\\ space\\  (4)  ^  -J-\\ \\ Final\\ space\\ (5)  ^
 +|  LSCE  |  0 (6)  |  0 (6)  |  1.6G  |  451M  |    |    |    |    |    |    |
 +|  ciclad  |  0 (6)  |  0 (6)  |  ?  |  455M  |  578M  |  4.7G  |  1.6G  |  545M  |  7.3  |  2.0  |
 +|  VirtualBox\\ FC20  |  0 (6)  |  0 (6)  |  0 (6)  |  0 (6)  |  565M  |  5.0G  |  1.7G  |  511M  |  7.3  |  1.7  |
 +
 +Notes:
 +  * (1) The compilation directories of cmake and Qt can be removed once the installation of cmake/Qt is finished (ie can be removed before starting with uv-cdat)
 +  * (2) The packages required for the GUI, and Paraview, were not installed and would probably require even more space
 +  * (3) The size of this directory can change depending on the dependencies use from what's already available on the system (xml2 and xslt in this installation) and what we recompile
 +  * (4) Sum of the columns, if we erase the A/C directories: B + D + E + F + G
 +  * (5) Sum of the columns, if we erase the B/E/F directories: D + G
 +  * (6) We used the version available on the system (that was enough up-to-date)
 +
  
  
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 ^  Machine  ^  Config  ^  Python/date  ^ Notes  ^ ^  Machine  ^  Config  ^  Python/date  ^ Notes  ^
 |  LSCE  |  LSCE_11  |  2.7.7, Aug  1 2014  | Used the same recompiled cmake and Qt as for 1.5.1 | |  LSCE  |  LSCE_11  |  2.7.7, Aug  1 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
-|  LSCE  |  ciclad_11-ng  |  2.7.7, Aug  4 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |+|  ciclad |  ciclad_11-ng  |  2.7.7, Aug  4 2014  | Used the same recompiled cmake and Qt as for 1.5.1 |
  
 ==== Log files ==== ==== Log files ====
other/uvcdat/installed.1421687500.txt.gz · Last modified: 2015/01/19 18:11 by jypeter
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